Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq19 143 3e-29 seq6 125 8e-24 seq2 98.7 1e-15 seq13 95.1 1e-14 seq5 87.8 2e-12 >seq19 Length=309173 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| || || || ||||| || || |||||||| ||||| ||| | | Sbjct 224745 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 224804 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | ||||| || || ||||||||||| |||||||| || || |||||||| Sbjct 224805 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCGA 224864 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || || |||||||| |||||||||| || ||||| | || || || |||| Sbjct 224865 CTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCAG 224924 Query 27592 AAGGAATCCACTCTTCATCTAGTC 27615 ||||| ||||| || || || ||| Sbjct 224925 AAGGAGTCCACCCTCCACCTCGTC 224948 >seq6 Length=1120801 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || ||||| |||||||||||| |||| || | || | ||| Sbjct 511847 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 511906 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| || |||||||| | || || || || Sbjct 511907 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 511966 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || ||||| | || ||||| | ||||| || |||| ||||| || || ||| Sbjct 511967 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTT 512026 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 ||||| || | || || || || || || Sbjct 512027 CATCTCGTTCTTCGACTCCGAGGAGGGCA 512055 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| || ||||| || ||||| |||||||||||| |||| || | || | ||| Sbjct 511483 CTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAAG 511542 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| |||||||| || ||||| || |||||||| | || || || || Sbjct 511543 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGGA 511602 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| || ||||| | || ||||| | ||||| || |||| |||| Sbjct 511603 AAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGG 511651 >seq2 Length=2005798 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 ||||||||||||| |||| ||||||||| ||| |||| |||||||||| ||| | Sbjct 806399 CCTTGTAGCACATAAACGGTCCACCGGTCTCAGTCTGAGACTCCAGGATGGCGTACCAGA 806340 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTT 81145 || | || || ||||| |||||||||||||| | | ||||| || | Sbjct 806339 CCTTTTGAGCAGAAACAACCTTTCGGAATTTGCCTTCTCGCTCGTACTTCTCGAACAAGG 806280 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | ||||||| | | |||| || || | | | | |||||||||||||||||||| || Sbjct 806279 CTTCGAACTCGTCTCCGTAAACCTCGGACAAGCCGGGGCACTCGTTAGGGCACATAAGCG 806220 Query 81206 GCCAGTC 81212 ||||||| Sbjct 806219 GCCAGTC 806213 >seq13 Length=590245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || ||||||||||| || ||| || || |||||||| || ||||| || Sbjct 19729 GTTGAGGGTATCTTCTTTTCTGGATCGTTCGCCTCGATCTTCTGGCTCAAGAAGCGAGGA 19670 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 || ||||| || || |||||||||| ||| ||||||| |||||||||| || ||| Sbjct 19669 CTCATGCCTGGATTGACGTTTTCGAATGAGTTGATCTCGAGGGACGAGGGTCTTCAC 19613 >seq5 Length=1443891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||||||||||||||| || || |||||||| || || || || || ||||| Sbjct 854395 ATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 854336 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 || ||||| | || ||||| | ||||| || |||| |||| Sbjct 854335 CTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAAGG 854293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310093458160