Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq19 201 3e-46 seq6 150 4e-31 seq5 96.9 8e-15 >seq19 Length=309173 Score = 201 bits (222), Expect = 3e-46 Identities = 168/206 (82%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| ||||| || |||||||| || |||||||| ||||||| |||||| | ||| Sbjct 224953 CTAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGGCCA 224894 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || || |||||||| || ||||||||||| || || || ||||| |||| |||||||||| Sbjct 224893 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGATCAGGGGGAATTCCTTCCTTG 224834 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || ||||| |||||||||||||| || ||||| || ||||| Sbjct 224833 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 224774 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| |||||||| |||||||| || Sbjct 224773 GTCTTACCCGTGAGGGTCTTTACGAA 224748 >seq6 Length=1120801 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || ||||| || ||||| || |||||||| || |||| ||||| Sbjct 512046 CGGAGTCGAAGAACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTT 511987 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || |||||||| | || || || |||||||| | || Sbjct 511986 CGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCC 511927 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||||||||| || ||||| ||||| || || || |||||||||||| Sbjct 511926 TCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATAGTATCGGATGACTCAACCTCGAGA 511867 Query 211074 GTGATCGTCTTTCCCGTGAGA 211094 ||||| ||||||||||| ||| Sbjct 511866 GTGATGGTCTTTCCCGTAAGA 511846 Score = 132 bits (146), Expect = 1e-25 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| ||||| | ||| || || |||||||| || |||||||| Sbjct 511649 TTCTGGATGTTGTAGTCCGACAGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATC 511590 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || || |||||||| | || ||||| ||||||||||| || ||||| ||| Sbjct 511589 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 511530 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || ||||||||||||||||| ||||||||||| ||| Sbjct 511529 ATAGTATCGGATGACTCAACCTCGAGAGTGATGGTCTTTCCCGTAAGA 511482 >seq5 Length=1443891 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| |||||| | ||| || || |||||||| || |||||||| Sbjct 854295 TTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATG 854354 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 || || || || ||||| |||| ||| ||||||||||| |||| Sbjct 854355 AGTCGCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCT 854397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151361379695