Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq19 145 2e-29 seq6 136 8e-27 seq3 87.8 4e-12 >seq19 Length=309173 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| | ||| || || || | ||| || || ||||||||||| || | | Sbjct 224965 CCTCCTCGCAACCTAAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 224906 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || ||||| ||||| | || || || ||| ||| Sbjct 224905 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGATCAGGGGGA 224846 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 224845 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 224786 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 || || ||||| ||||||||||| | ||||| ||||| |||| Sbjct 224785 TCAAGGGTGATGGTCTTACCCGTGAGGGTCTTTACGAAGATCT 224743 >seq6 Length=1120801 Score = 136 bits (150), Expect = 8e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || ||||| | || || || |||||||||||||| | Sbjct 512052 CCTCCTCGGAGTCGAAGAACGAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 511993 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || ||||| |||||||| || || || ||| || Sbjct 511992 AGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGATCAGGAGGG 511933 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||| || || ||| | |||||||| || || | || || Sbjct 511932 ATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATAGTATCGGATGACTCAACC 511873 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||| ||||| ||||| Sbjct 511872 TCGAGAGTGATGGTCTTTCCCGT 511850 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || || || ||||| || || || ||||| |||||| Sbjct 511649 TTCTGGATGTTGTAGTCCGACAGGGTTCGTCCGTCCTCAAGCTGCTTTCCGGCGAAGATC 511590 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || || ||| || ||||||||||| || |||||||| || || ||| | ||| Sbjct 511589 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 511530 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || | || || ||||||||||| ||||| ||||| Sbjct 511529 ATAGTATCGGATGACTCAACCTCGAGAGTGATGGTCTTTCCCGT 511486 >seq3 Length=1532821 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 315650 TGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGA 315709 ||||| |||| || | ||| || || |||| | |||||| ||||| | || ||| Sbjct 512318 TGTGAGTAATGACGAGCACTCCTCCCTCGAAGTCCTTAAGGGCCTCGATAAGAGCGGCGA 512377 Query 315710 GACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCC 315769 | ||| ||||||| |||| ||||||||||| | | ||||||||||||| || ||| Sbjct 512378 GGGACTCTCGGTCCAAGTAGTTCGTCGGCTCATCCAACATGATGACGTGGGGTCGTCGCC 512437 Query 315770 ATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATG 315825 | ||||| || | ||||| ||| | ||||| || || || || || || ||| Sbjct 512438 AGGTGGCGGCTCCAAGAACGACCTTGACCTTTTGTCCTCCGGAGAGACCTCGCATG 512493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738623312122