Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xanthophyllomyces_20dendrorhous_20[genbank_20GCA_5F001600435.1_20201 6-03-01] 43 sequences; 19,108,479 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19 163 7e-35 seq6 131 4e-25 seq5 91.5 4e-13 >seq19 Length=309173 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || ||||| || || || |||||||| |||||||| || |||||| Sbjct 224745 ATCTTCGTAAAGACCCTCACGGGTAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACC 224804 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| |||||||| || || || ||||| ||| Sbjct 224805 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAGCGA 224864 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||||||||| || |||||||| ||||| | || ||| | ||||| ||| |||| Sbjct 224865 CTTATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGAACCCTTTCGGATTACAACATCCAG 224924 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || Sbjct 224925 AAGGAGTCCACCCTCCACCTCGT 224947 >seq6 Length=1120801 Score = 131 bits (144), Expect = 4e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 511846 TCTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAA 511905 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || || |||||||| || ||||| ||| | ||||||||||| Sbjct 511906 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 511965 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||| ||||| || || ||| | || || | || || ||| |||| || || || || || Sbjct 511966 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAAGGAGTCTACCCT 512025 Query 178121 GCATCTTGTTTTGAGACTCAGA 178142 ||||| ||| | ||||| || Sbjct 512026 TCATCTCGTTCTTCGACTCCGA 512047 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 511482 TCTTACGGGAAAGACCATCACTCTCGAGGTTGAGTCATCCGATACTATCGACAACGTCAA 511541 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| ||||| || || || |||||||| || ||||| ||| | ||||||||||| Sbjct 511542 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCCGG 511601 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||| ||||| || || ||| | || || | || || ||| |||| || Sbjct 511602 AAAGCAGCTTGAGGACGGACGAACCCTGTCGGACTACAACATCCAGAA 511649 >seq5 Length=1443891 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||||||||| || ||||| || || || ||||| ||||| |||||||||||||| | Sbjct 854397 AGATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGC 854338 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||| || || ||| | || ||| | || || ||| |||| || Sbjct 854337 AGCTTGAGGACGGACGAACCCTTTCGGACTACAACATCCAGAA 854295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730536819342