Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 >seq1 Length=85208 Score = 109 bits (120), Expect = 6e-19 Identities = 285/433 (66%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| ||||||| || | ||| ||||| | |||||| || ||||| || || || Sbjct 27389 AGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTC 27448 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||| |||| || || ||||| | |||||| ||||||||||| | ||||| ||| Sbjct 27449 AGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAG 27508 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || || ||||| || | ||| | || | | || | | | | || | || | | Sbjct 27509 AAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCC 27568 Query 16379 CGAATCCATTTCTGTAC--CCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 ||||| ||| | ||| ||||| || | || | | | ||||| || | Sbjct 27569 TTGATCCA--CCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCG 27626 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | || || | | || || || | || || ||||| ||||| || || |||| Sbjct 27627 CATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCTGT 27686 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||| || ||||| |||||||| || |||||| || || || || || || ||||| | Sbjct 27687 ACACCTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGG 27746 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || || ||| | | || || || ||||||||| || || ||||| |||| Sbjct 27747 GGATCTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTG 27806 Query 16617 CAGCAAAAAACGC 16629 | |||||||| || Sbjct 27807 CTGCAAAAAAGGC 27819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403359841640