Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 307 1e-78 seq1207 123 3e-23 seq944 114 1e-20 >seq1 Length=85208 Score = 307 bits (340), Expect = 1e-78 Identities = 445/625 (71%), Gaps = 5/625 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||| ||||||| |||||| | || ||||| | || || | | |||| ||| Sbjct 28008 GAGCAGCTGCTGGCAGAGAACAAGCAGCGCTTCGTTTTGTTTCCGCTGAAGTACCACGAC 27949 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| ||||||||| || |||||||||| |||||||| | |||||| | |||||| Sbjct 27948 ATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGGAGATCGACCTG 27889 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||| ||||| | ||||||| ||| ||| ||||||||| | || || | | Sbjct 27888 TCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCGACAACGAAAGACACTTTCTGTCG 27829 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || || |||||||| || || |||||||| || ||| ||||| ||| ||||||| Sbjct 27828 CATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAGTCCTGGAGAACCTGATCGAGCGG 27769 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| |||||||| ||| | ||||||||||||| || ||||| || ||||| || Sbjct 27768 TTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCCAGATAATGATC 27709 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGA 116931 |||||| | ||||| || |||| ||||| ||||||||| | | | | || Sbjct 27708 GAGAACATCCACTCCGAGGTGTACAGCTTGCTCATTGACACGTACATCGAGGACACCGCC 27649 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 | ||||| | | | || || || ||||| || | |||| |||||| ||||||||||| Sbjct 27648 G-AGAAGGACAGGCTTTTCAATGCGATCGAAACACTTCCGTACGTCAAGGAGAAGGCCGA 27590 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||| || | | |||||| | ||| ||| | ||||| || ||| || || || | Sbjct 27589 CTGGACGATCAGGTGGATCAAGGACAGGGAGACGACCTTCCCCGTGCGGCTTGTTGCAAT 27530 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||| || |||||||| ||||||| |||||| || || || || || ||||| ||||| Sbjct 27529 CGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCTTCTGGCTGAAGAA 27470 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 || ||||| |||| || ||||| ||| |||||||| ||| | |||||||||| | Sbjct 27469 GCGGGGCCTGCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCCGGGACGAGGGAGT 27410 Query 117172 GCATTGCGACTTTGCCTGTTTGCTG 117196 ||| |||||||||| || ||||| Sbjct 27409 GCACCGCGACTTTGCGTGCCTGCTG 27385 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| || || || || || || || |||||| |||| ||||| | Sbjct 80494 AAATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAG 80435 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | || |||||| |||||| | ||||||||||| |||||| | |||| Sbjct 80434 CCGAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACC 80375 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||||||| | |||||| || ||||| || |||| | || || |||||||| Sbjct 80374 AGCAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACA 80315 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||| | ||||||||||| || | || || |||| || ||| Sbjct 80314 ACATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGGTGGC 80262 >seq1207 Length=23098 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| |||||| | |||||||| || |||||| |||||||||| ||||| || | || Sbjct 18680 TCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAGCAGCGACTGATTTTCG 18621 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || |||||||| |||| | | || ||| |||||||||||||||||||| | | Sbjct 18620 CAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAACATCCAGAAGGAATCGA 18561 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||| || ||| | || | ||||| Sbjct 18560 CGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530 >seq944 Length=26795 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| ||||| || |||||||| ||||| |||| || || || | Sbjct 9638 AATGCAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATC 9579 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | ||||| |||||| | ||||| ||||| ||||| | || || Sbjct 9578 CGAATCCATCGACTCTGTCAAGACAAAAATCCAGGACAAGGAGGGAATCCCGCCAGATCA 9519 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | ||| || || ||||| || |||| | || ||| |||||||| Sbjct 9518 GCAGAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGACTACAA 9459 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| | || || || || ||| |||| | || ||||| Sbjct 9458 CATACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGAGGCGG 9411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208077705520