Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1 307 1e-78
seq1207 123 3e-23
seq944 114 1e-20
>seq1
Length=85208
Score = 307 bits (340), Expect = 1e-78
Identities = 445/625 (71%), Gaps = 5/625 (1%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||| ||||||| |||||| | || ||||| | || || | | |||| |||
Sbjct 28008 GAGCAGCTGCTGGCAGAGAACAAGCAGCGCTTCGTTTTGTTTCCGCTGAAGTACCACGAC 27949
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| ||| ||||||||| || |||||||||| |||||||| | |||||| | ||||||
Sbjct 27948 ATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGGAGATCGACCTG 27889
Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||| ||||| | ||||||| ||| ||| ||||||||| | || || | |
Sbjct 27888 TCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCGACAACGAAAGACACTTTCTGTCG 27829
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|| || || |||||||| || || |||||||| || ||| ||||| ||| |||||||
Sbjct 27828 CATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAGTCCTGGAGAACCTGATCGAGCGG 27769
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| |||||||| ||| | ||||||||||||| || ||||| || ||||| ||
Sbjct 27768 TTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCCAGATAATGATC 27709
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGA 116931
|||||| | ||||| || |||| ||||| ||||||||| | | | | ||
Sbjct 27708 GAGAACATCCACTCCGAGGTGTACAGCTTGCTCATTGACACGTACATCGAGGACACCGCC 27649
Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991
| ||||| | | | || || || ||||| || | |||| |||||| |||||||||||
Sbjct 27648 G-AGAAGGACAGGCTTTTCAATGCGATCGAAACACTTCCGTACGTCAAGGAGAAGGCCGA 27590
Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051
||| || | | |||||| | ||| ||| | ||||| || ||| || || || |
Sbjct 27589 CTGGACGATCAGGTGGATCAAGGACAGGGAGACGACCTTCCCCGTGCGGCTTGTTGCAAT 27530
Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111
||| || |||||||| ||||||| |||||| || || || || || ||||| |||||
Sbjct 27529 CGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCTTCTGGCTGAAGAA 27470
Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171
|| ||||| |||| || ||||| ||| |||||||| ||| | |||||||||| |
Sbjct 27469 GCGGGGCCTGCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCCGGGACGAGGGAGT 27410
Query 117172 GCATTGCGACTTTGCCTGTTTGCTG 117196
||| |||||||||| || |||||
Sbjct 27409 GCACCGCGACTTTGCGTGCCTGCTG 27385
Score = 150 bits (166), Expect = 2e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || ||||| || || || || || || || |||||| |||| ||||| |
Sbjct 80494 AAATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAG 80435
Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | || |||||| |||||| | ||||||||||| |||||| | ||||
Sbjct 80434 CCGAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACC 80375
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| ||||||| | |||||| || ||||| || |||| | || || ||||||||
Sbjct 80374 AGCAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACA 80315
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||||| | ||||||||||| || | || || |||| || |||
Sbjct 80314 ACATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGGTGGC 80262
>seq1207
Length=23098
Score = 123 bits (136), Expect = 3e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| |||||| | |||||||| || |||||| |||||||||| ||||| || | ||
Sbjct 18680 TCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAGCAGCGACTGATTTTCG 18621
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| || || |||||||| |||| | | || ||| |||||||||||||||||||| | |
Sbjct 18620 CAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAACATCCAGAAGGAATCGA 18561
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| ||||| || ||| | || | |||||
Sbjct 18560 CGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530
>seq944
Length=26795
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || |||||||| ||||| || |||||||| ||||| |||| || || || |
Sbjct 9638 AATGCAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATC 9579
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | | | | ||||| |||||| | ||||| ||||| ||||| | || ||
Sbjct 9578 CGAATCCATCGACTCTGTCAAGACAAAAATCCAGGACAAGGAGGGAATCCCGCCAGATCA 9519
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||| || | ||| || || ||||| || |||| | || ||| ||||||||
Sbjct 9518 GCAGAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGACTACAA 9459
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| || ||||| | || || || || ||| |||| | || |||||
Sbjct 9458 CATACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGAGGCGG 9411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208077705520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |