Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq944 100 2e-16 seq1 89.7 4e-13 >seq944 Length=26795 Score = 100 bits (110), Expect = 2e-16 Identities = 158/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA-- 118583 || ||| | ||||| ||| || || ||||| |||||||| || | |||| | | Sbjct 9425 CAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCG--AGAGTGTTCTTCCG 9482 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || |||||||| || |||||| | || || | ||||||||| || || || ||||||||| Sbjct 9483 TCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTG 9542 Query 118644 T-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTC 118700 | ||| | ||||||| || || |||| || || | ||| || ||||||| || Sbjct 9543 TCCTGGA--TTTTTGTCTTGACAGAGTCGATGGATTCGGATGC-ATCCACCTCGAGTGTG 9599 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| ||||| || ||||| || |||||||| Sbjct 9600 ATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637 >seq1 Length=85208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || || | ||||||||||| ||||| Sbjct 80296 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCC 80355 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||| | |||||| || || || || ||||| ||||| |||||| || Sbjct 80356 GCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTTTGCCTTG 80415 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 ||| |||| | || | |||||||||| ||| | ||| || || ||||| || Sbjct 80416 ACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTC 80475 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 80476 TTGACGAAGATCTGCAT 80492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821268819084