Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq944 125 8e-24 seq1207 96.9 4e-15 >seq944 Length=26795 Score = 125 bits (138), Expect = 8e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| ||| | || | ||| |||||||| || ||||| || | Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAG 9470 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || |||||||| ||||||||||| |||| |||||| || | ||| Sbjct 9471 AGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGG 9530 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTG--AGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||||||| ||| || |||| | | ||| | |||| Sbjct 9531 ATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCG--ATGGATTCGGATGCATCCA 9588 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | |||| ||||| |||||||| || ||||||||||| ||||| |||||| Sbjct 9589 CCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638 >seq1207 Length=23098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || | | |||| || |||||||| || ||||| Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||||||||||||| | || | | || |||||| |||||| |||| | | Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGAC 18685 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || ||| ||| || || || | |||||| || || || || || ||||| ||| Sbjct 18686 TCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACA 18745 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 18746 AAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805255887560