Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq944 125 8e-24
seq1207 96.9 4e-15
>seq944
Length=26795
Score = 125 bits (138), Expect = 8e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||||| ||| | || | ||| |||||||| || ||||| || |
Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAG 9470
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || | |||| || |||||||| ||||||||||| |||| |||||| || | |||
Sbjct 9471 AGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGG 9530
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTG--AGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | |||||||||| ||||||| ||| || |||| | | ||| | ||||
Sbjct 9531 ATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCG--ATGGATTCGGATGCATCCA 9588
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
| |||| ||||| |||||||| || ||||||||||| ||||| ||||||
Sbjct 9589 CCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638
>seq1207
Length=23098
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || | | |||| || |||||||| || |||||
Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| |||||||||||||| | || | | || |||||| |||||| |||| | |
Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGAC 18685
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | || ||| ||| || || || | |||||| || || || || || ||||| |||
Sbjct 18686 TCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACA 18745
Query 43173 AAGATTTGCAT 43183
||||| |||||
Sbjct 18746 AAGATCTGCAT 18756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571805255887560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |