Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 6e-17
seq1207 96.9 3e-15
>seq1
Length=85208
Score = 102 bits (112), Expect = 6e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| |||||||| ||||||||| |||||||||||| |||| | |||| || |
Sbjct 80285 CAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGA 80344
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || ||||| ||||| || | | ||| ||||| || || | ||||| |||||| |
Sbjct 80345 GCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGA 80404
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
||||| ||| |||| | | | || | || ||||| | ||| |||||||| |
Sbjct 80405 TTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCC 80464
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| ||||| ||||| || ||||| |||||
Sbjct 80465 CTGTCAGTGTCTTGACGAAGATCTGCAT 80492
>seq1207
Length=23098
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || | || ||| || || | || ||||| |||||||| |||||||||||
Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
||| | |||| ||||| || ||||| ||||| |||| ||||| ||||| || ||
Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCA-CG-CTGTCCCCACCCTCCA 45287
| || || |||||| |||||| ||| || | | | | || || || | || |
Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGA--GTCAA 18707
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGT 45338
|||| | || || ||||| || ||||| |||||||||||||| |||||||
Sbjct 18708 CCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCATGT 18758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395066884531267
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |