Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq655 223 3e-53 seq1 176 4e-39 seq944 122 8e-23 seq1207 102 7e-17 >seq655 Length=33610 Score = 223 bits (246), Expect = 3e-53 Identities = 445/654 (68%), Gaps = 4/654 (1%) Strand=Plus/Plus Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTG 23092 |||||||| || | | ||| || ||| ||||||| || || || || || || ||| Sbjct 29725 AGATTGCAGACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCACAGGTTG 29784 Query 23093 CTACACTTTATCGTGCCCAAATTGCTC-TGGTTGCTTTTTCGATTGCACGAATCCTTGTA 23151 || | ||| || || |||| | ||| ||||| | ||||| ||||||| |||||||| Sbjct 29785 CTCCCCTTGATTGTCCCCAGGT-GCTGGTGGTTTGTCTTTCGGTTGCACGCGTCCTTGTA 29843 Query 23152 GAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTG 23211 | |||||||| | || ||||||| ||||| || ||| | |||||| |||| Sbjct 29844 CATGATGTACGGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGCTTCTG 29903 Query 23212 AGCGTGAACACGTCGCACGTACCTGCCT-TCTTCCTCGTACTTTTGGTACAACGCGTCAA 23270 || | | ||| | || ||| || ||||||| | ||||| ||| || | Sbjct 29904 CGCCGGCATT-GTCTTCTTTCCCAGCCCGTCCCGCTCGTACCGCTCGTACAGCGCCTCGA 29962 Query 23271 ATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACA 23330 | || | || | ||| ||| || |||| | ||||||| | || |||| Sbjct 29963 AGTCCTCTCCCCACGTCTCGCTCAGCCCAGGCGCATCGTTCGGACAGAACAGCGTCCAGC 30022 Query 23331 TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTT 23390 | || || || ||||| | |||||| || || || ||||| || || ||| |||| | Sbjct 30023 TCCCGTTGTTCTCCACGCGCCGCATAAACAGGTCTGGCATCCACAGCGCATAGGACAGGT 30082 Query 23391 CGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGT 23450 | || ||||| | |||||| ||||| |||||||| || | | ||||||| ||| | Sbjct 30083 CCCGTGCGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGAGAGGAAGTCCAGCACAT 30142 Query 23451 CCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGAT 23510 |||||||||||||||||||||| | ||||||||||||||||| || | || ||||| | Sbjct 30143 CCGCATGCCACGGCTCGAGGTAGATCGCAAACGCGCCCGGTCTTTTGCTTCCTCCCTGGT 30202 Query 23511 CGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGC 23570 | | || || ||||| | | || | |||||||| || | |||||| || ||| Sbjct 30203 CCGCATACCGTGCCGTTGCATCAAAGACACGGAGCATCGGAACAATACCGTTTGAAACGC 30262 Query 23571 CGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGC 23630 || | ||| | | || || |||| || | |||||| | || | || |||| Sbjct 30263 CGTTTGTTCCCCGGATAAGAGACCCGCTTGCCCGGATGTTGTGGATGTTCAGCCCGATGC 30322 Query 23631 CTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 || |||| | | |||||||| |||||| ||| |||| || | |||||| |||| Sbjct 30323 CTGCGCCTGTCTGCGATATCAGCGCGCACTGTGTCAGTGTCTTGTAGATCCCCT 30376 >seq1 Length=85208 Score = 176 bits (194), Expect = 4e-39 Identities = 559/858 (65%), Gaps = 19/858 (2%) Strand=Plus/Minus Query 57547 TGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTT 57606 |||||||| | | || | ||||| ||| |||||||||| || | || || || || | Sbjct 27971 TGTTTCCGCTGAAGTACCACGACATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCT 27912 Query 57607 GGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAG 57663 |||| | || || | |||||||| ||| || ||| ||| || || | | Sbjct 27911 GGACGGCAGAGGAGATCGACCTGTCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCG 27852 Query 57664 AATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTG 57723 | || ||| | ||| | || || | || ||||| || ||| ||| || || | Sbjct 27851 ACAACGAAAGACACTTTCTGTCGCATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAG 27792 Query 57724 TTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCT 57783 | ||||| || |||| | || | || || || || | | |||||| | || | Sbjct 27791 TCCTGGAGAACCTGATCGAGCGGTTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTT 27732 Query 57784 TTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCG 57843 ||||||| || || | || || ||| | || || || |||| | ||||| | Sbjct 27731 TTTACGGGTTCCAGATAATGATCGAGAACATCCACTCCGAGGTGTACAGCTTGCTCATTG 27672 Query 57844 ATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGC 57903 | |||||| | |||||| || |||||| || || ||||| |||||||||||| | | Sbjct 27671 ACACGTACATCGAGGACACCGCCGAGAAGGACAGGCTTTTCAATGCGATCGAAACACTTC 27612 Query 57904 CCGCGATCGCCAAG---AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 | | || |||| ||||| || ||| | |||| ||||| || | || || | Sbjct 27611 C---GTACGTCAAGGAGAAGGCCGACTGGACGATCAGGTGGATCAAG---GACAGGGAGA 27558 Query 57961 CG---TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 || ||| ||| | |||| | || |||| || ||||| || || ||||| |||||| Sbjct 27557 CGACCTTCCCCGTGCGGCTTGTTGCAATCGCAGCAGTCGAGGGGATCTTCTTCTCGGGCG 27498 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||||| || || || ||| ||||||| || |||||| |||| || ||||| || | Sbjct 27497 CGTTTGCTGCGATCTTCTGGCTGAAGAAGCGGGGCCTGCTGCCTGGGCTGACCTTCTCGA 27438 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| |||| || |||||||| | || || ||||||||||| || | Sbjct 27437 ACGAGCTGATCAGCCGGGACGAGGGAGTGCACCGCGACTTTGCGTGCCTGCTGATGCGGC 27378 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 |||| || || ||| ||| ||| |||| ||| ||| |||||| || | || Sbjct 27377 ACATCAAGAACAAGCCGTCGCAGGAGGTCATCCAAAGCATCATCCGCGAGGCTGTTGAGA 27318 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 | || | ||| || ||| ||||| || || | || |||| |||||||| | Sbjct 27317 TAGAGCACCGCTTTCTCGGCGAGGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAAGC 27258 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT-GATTG-GAGA 58315 | |||| ||||||| |||| ||| |||||| ||| | ||| || || || |||| Sbjct 27257 TCATGTGCCAGTACATCGAGTATGTCGCCGACCATCTTCTCTCCGAGCTCGACTGCGAGA 27198 Query 58316 GCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAA 58375 || | ||||||| | || ||||| || |||||| | || ||||| || || Sbjct 27197 -AGTTA-TACAACAGCGAGAACCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAA 27140 Query 58376 GACAAACTTTTTCGAAAA 58393 || ||||| | ||| || Sbjct 27139 AACCAACTTCTACGAGAA 27122 >seq944 Length=26795 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| |||||||||||||| ||||| |||| || || | ||| Sbjct 9637 ATGCAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATCC 9578 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || |||| | ||||| ||| | ||| ||||||||| || | ||||| || || Sbjct 9577 GAATCCATCGACTCTGTCAAGACAAA-AATCCAGGACAAGGAGGGAATCCCGCCAGATCA 9519 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||||||||| || ||| | |||||| | || | || || || Sbjct 9518 GCAGAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGACTACAA 9459 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| ||||| |||||||| || || || || || | || || |||||| Sbjct 9458 CATACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGAGGCGGT 9410 >seq1207 Length=23098 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || || || ||||| ||||| || || || ||||| | || ||||| || Sbjct 18758 ACATGCAGATCTTTGTGAAGACACTGACCGGAAAGACAATCACGCTTGAGGTTGACTCGG 18699 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | ||||| | |||| |||||| ||||| | || || |||| Sbjct 18698 CCGAGTCGATCGAGTCCGTCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACC 18639 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| || || ||| |||| ||| | || | || || | Sbjct 18638 AGCAGCGACTGATTTTCGCAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACA 18579 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || |||||||| || ||||| || | |||||| | ||||| Sbjct 18578 ACATCCAGAAGGAATCGACGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756777017840