Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq779 149 5e-31 >seq779 Length=31144 Score = 149 bits (164), Expect = 5e-31 Identities = 288/415 (69%), Gaps = 15/415 (4%) Strand=Plus/Minus Query 20933 AACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC-A 20991 ||| |||| | |||| | ||| | ||| || | ||| ||||| || ||||| || | Sbjct 16087 AACATGGTCGGTGTAGATGTGCGTGTCGCCGATAAAGTGAACAAACTC-CCCGGTTTCCA 16029 Query 20992 GGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGA 21051 |||| || | ||| |||| | |||||||||| | |||| || ||||| ||||| | Sbjct 16028 GGCCAGTCAGGTGCGCGACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAA 15969 Query 21052 CCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC--CCGAGC 21109 | || || || ||||| | |||| |||||| ||| |||| ||||| || | ||| Sbjct 15968 CGCCAAGCCCGATGTCCCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGA 15909 Query 21110 CACGTAAAACTGACACAAAACGT--GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCG-C 21166 || |||||||| ||| ||| | || || || ||| ||||| | | | | | | | Sbjct 15908 CA--TAAAACTGGAACAG--CGTTGGGCACGGCGGAAGAACCATCAGAG-GCGCTGCAAC 15854 Query 21167 GGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG---CCGCCTGTTAATTAGATC 21223 ||| |||||||| | | ||| || |||| |||||| || || || || || Sbjct 15853 GGGATTCCACGCACTGACAACCATCCGCCTGTCGTGGATGTTCCCGCTTTTTATCGTGTC 15794 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 | ||| | ||||||| || ||||| | || ||||| || || | || |||| Sbjct 15793 AATCACCTTTTGCAGCTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTA 15734 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCG 21338 ||| ||||||||||| ||||||||||| |||||||| ||||| ||||| |||||| Sbjct 15733 CTCGGCCCCAAAATGCCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCG 15679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766996250960