Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 seq655 98.7 1e-15 >seq1 Length=85208 Score = 125 bits (138), Expect = 1e-23 Identities = 368/566 (65%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||| ||||| |||||||| | || || || ||||| || || || || Sbjct 27392 CACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGC 27451 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || |||| ||||| ||||| || ||||| || || | ||||| | || || |||||| Sbjct 27452 CCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAG 27511 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || ||||| || | |||||||| | | | | | | | ||||| | Sbjct 27512 ATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCCTTG 27571 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | | ||| |||||||||| || || | || | ||||| || ||||| Sbjct 27572 ATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTG 27631 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || || || || | || | | || || || || | | || |||| Sbjct 27632 AAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCTGTACACC 27691 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || ||||| ||||| | ||||||| ||| Sbjct 27692 TCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGATC 27751 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || || || || || | || || ||||| ||||| || |||||| Sbjct 27752 TGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGCA 27811 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT---TCCAA 50433 ||||| || | ||||| | ||| ||| |||||||| || || || | |||| Sbjct 27812 AAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCTCCAG 27871 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || || || || | || | || || | ||||| || || ||||| | || Sbjct 27872 TCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGACTGC 27931 Query 50494 TTATACATATTCCAGATGTCATGATA 50519 || ||||| | ||||||||| || || Sbjct 27932 TTGTACATGTCCCAGATGTCGTGGTA 27957 >seq655 Length=33610 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 78734 CGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGT 78793 |||||||||| |||| || ||||||||||| || || || || || |||| |||| Sbjct 28823 CGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGT 28882 Query 78794 AGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATT 78853 |||| ||||| ||||| || ||||| | || || || || | ||| || | || | Sbjct 28883 AGAAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTCGGCAATGTAGATGTTGAGCGACT 28942 Query 78854 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 78913 | ||||| |||||| | | || | |||||| ||||| | ||||| |||| || || | Sbjct 28943 GGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGA 29002 Query 78914 TTTCCCA 78920 | ||||| Sbjct 29003 TCTCCCA 29009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253294372280