Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 1e-23
seq655 98.7 1e-15
>seq1
Length=85208
Score = 125 bits (138), Expect = 1e-23
Identities = 368/566 (65%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || |||| ||||| |||||||| | || || || ||||| || || || ||
Sbjct 27392 CACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGC 27451
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| |||| ||||| ||||| || ||||| || || | ||||| | || || ||||||
Sbjct 27452 CCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAG 27511
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136
|| || || ||||| || | |||||||| | | | | | | | ||||| |
Sbjct 27512 ATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCCTTG 27571
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196
|||||| | | ||| |||||||||| || || | || | ||||| || |||||
Sbjct 27572 ATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTG 27631
Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256
|| || || || || | || | | || || || || | | || ||||
Sbjct 27632 AAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCTGTACACC 27691
Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316
|| || || ||||| || || ||||| || ||||| ||||| | ||||||| |||
Sbjct 27692 TCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGATC 27751
Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376
|| || || || || || || | || || ||||| ||||| || ||||||
Sbjct 27752 TGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGCA 27811
Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT---TCCAA 50433
||||| || | ||||| | ||| ||| |||||||| || || || | ||||
Sbjct 27812 AAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCTCCAG 27871
Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493
|| || || || | || | || || | ||||| || || ||||| | ||
Sbjct 27872 TCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGACTGC 27931
Query 50494 TTATACATATTCCAGATGTCATGATA 50519
|| ||||| | ||||||||| || ||
Sbjct 27932 TTGTACATGTCCCAGATGTCGTGGTA 27957
>seq655
Length=33610
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 78734 CGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGT 78793
|||||||||| |||| || ||||||||||| || || || || || |||| ||||
Sbjct 28823 CGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGT 28882
Query 78794 AGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATT 78853
|||| ||||| ||||| || ||||| | || || || || | ||| || | || |
Sbjct 28883 AGAAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTCGGCAATGTAGATGTTGAGCGACT 28942
Query 78854 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 78913
| ||||| |||||| | | || | |||||| ||||| | ||||| |||| || || |
Sbjct 28943 GGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGA 29002
Query 78914 TTTCCCA 78920
| |||||
Sbjct 29003 TCTCCCA 29009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718253294372280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |