Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq655 111 2e-19
>seq655
Length=33610
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 98016 ATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTG 98075
||||||| ||| || || ||||| ||| || |||||||| ||| |||| |
Sbjct 29045 ATCCCGGCGGAGCTGAAGAGGCTCTACCGGACGGTGTGGGAGATCCCGCAGAAGAACATC 28986
Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135
||| | ||||| || ||| | || ||||| ||||| || || ||| |||| | |||
Sbjct 28985 ATCCAGATGGCAGCAGACCGCGGGCCGTACATCGACCAAAGCCAGTCGCTCAACATCTAC 28926
Query 98136 GTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGC 98195
|||||||||| ||||| || |||| || ||||| |||| ||||| |||||
Sbjct 28925 ATTGCCGAGCCAACCTATTCGCGCCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGG 28866
Query 98196 CTCAAGACGGGCATGTACTATCTGAGAAC 98224
|| ||||| ||||||||||||||| ||||
Sbjct 28865 CTGAAGACCGGCATGTACTATCTGCGAAC 28837
Score = 109 bits (120), Expect = 8e-19
Identities = 322/489 (66%), Gaps = 12/489 (2%)
Strand=Plus/Minus
Query 96853 ATGCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCT 96912
|||||| | |||| || | ||||| || | ||| | || ||||| | || |||
Sbjct 30223 ATGCAACGGCACGGTATGCGGACCAGGGAGGAAGCAAAAGACCGGGCGCGTTTGCGATCT 30164
Query 96913 ACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCT 96972
|| | || || ||||| ||||| || | ||||| || | | || ||| | |||
Sbjct 30163 ACCTCGAGCCGTGGCATGCGGATGTGCTGGACTTCCTCTCGCTCAAGAAGAACACGGGCA 30104
Query 96973 TTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032
|| ||| || || ||||| ||| ||||| || ||| ||||||| |||| |||
Sbjct 30103 AGGAGGAGTTCCGCGCACGGGACCTGTCCTATGCGCTGTGGATGCCAGACCTGTTTATGC 30044
Query 97033 AGCGCGTC---AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089
|||||| ||| |||| ||| ||| || | || || || | || || |
Sbjct 30043 GGCGCGTGGAGAACAACGGGAGCT---GGACGCTGTTCTGTCCGAACGATGCGCCTGGGC 29987
Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA-GGGC 97148
|| ||| ||||| || || || ||||| |||| | ||||||| || ||||
Sbjct 29986 TGAGCGAGACGTGGGGAGAGGACTTCGAGGCGCTGTACGAGCGGTACGAGCGGGACGGGC 29927
Query 97149 CGATACGTGAGACGA-GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGT 97207
| | |||| | | || ||| || |||||| ||| || || || || ||| |
Sbjct 29926 TGGGAAAGAAGACAATGCCGGCGCAGAAG--CTGTGGCAGGAGATAGTCACCGCGCAGAT 29869
Query 97208 AGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAAC 97266
||||| |||| |||||||| | |||||||| | ||| || || || | ||||| |
Sbjct 29868 CGAGACCGGAAACCCGTACATCATGTACAAGGACGC-GTGCAACCGAAAGACAAACCACC 29810
Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326
||| |||| || |||||||| ||| ||||||||||| || || |||||| || |
Sbjct 29809 AGCACCTGGGGACAATCAAGGGGAGCAACCTGTGCACGGAGATCGTCGAGTACATGTCGC 29750
Query 97327 CGGACGAGA 97335
|||| ||||
Sbjct 29749 CGGAGGAGA 29741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741043202384520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |