Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq655 111 2e-19 >seq655 Length=33610 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 98016 ATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTG 98075 ||||||| ||| || || ||||| ||| || |||||||| ||| |||| | Sbjct 29045 ATCCCGGCGGAGCTGAAGAGGCTCTACCGGACGGTGTGGGAGATCCCGCAGAAGAACATC 28986 Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135 ||| | ||||| || ||| | || ||||| ||||| || || ||| |||| | ||| Sbjct 28985 ATCCAGATGGCAGCAGACCGCGGGCCGTACATCGACCAAAGCCAGTCGCTCAACATCTAC 28926 Query 98136 GTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGC 98195 |||||||||| ||||| || |||| || ||||| |||| ||||| ||||| Sbjct 28925 ATTGCCGAGCCAACCTATTCGCGCCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGG 28866 Query 98196 CTCAAGACGGGCATGTACTATCTGAGAAC 98224 || ||||| ||||||||||||||| |||| Sbjct 28865 CTGAAGACCGGCATGTACTATCTGCGAAC 28837 Score = 109 bits (120), Expect = 8e-19 Identities = 322/489 (66%), Gaps = 12/489 (2%) Strand=Plus/Minus Query 96853 ATGCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCT 96912 |||||| | |||| || | ||||| || | ||| | || ||||| | || ||| Sbjct 30223 ATGCAACGGCACGGTATGCGGACCAGGGAGGAAGCAAAAGACCGGGCGCGTTTGCGATCT 30164 Query 96913 ACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCT 96972 || | || || ||||| ||||| || | ||||| || | | || ||| | ||| Sbjct 30163 ACCTCGAGCCGTGGCATGCGGATGTGCTGGACTTCCTCTCGCTCAAGAAGAACACGGGCA 30104 Query 96973 TTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGA 97032 || ||| || || ||||| ||| ||||| || ||| ||||||| |||| ||| Sbjct 30103 AGGAGGAGTTCCGCGCACGGGACCTGTCCTATGCGCTGTGGATGCCAGACCTGTTTATGC 30044 Query 97033 AGCGCGTC---AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 |||||| ||| |||| ||| ||| || | || || || | || || | Sbjct 30043 GGCGCGTGGAGAACAACGGGAGCT---GGACGCTGTTCTGTCCGAACGATGCGCCTGGGC 29987 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA-GGGC 97148 || ||| ||||| || || || ||||| |||| | ||||||| || |||| Sbjct 29986 TGAGCGAGACGTGGGGAGAGGACTTCGAGGCGCTGTACGAGCGGTACGAGCGGGACGGGC 29927 Query 97149 CGATACGTGAGACGA-GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGT 97207 | | |||| | | || ||| || |||||| ||| || || || || ||| | Sbjct 29926 TGGGAAAGAAGACAATGCCGGCGCAGAAG--CTGTGGCAGGAGATAGTCACCGCGCAGAT 29869 Query 97208 AGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAAC 97266 ||||| |||| |||||||| | |||||||| | ||| || || || | ||||| | Sbjct 29868 CGAGACCGGAAACCCGTACATCATGTACAAGGACGC-GTGCAACCGAAAGACAAACCACC 29810 Query 97267 GCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTC 97326 ||| |||| || |||||||| ||| ||||||||||| || || |||||| || | Sbjct 29809 AGCACCTGGGGACAATCAAGGGGAGCAACCTGTGCACGGAGATCGTCGAGTACATGTCGC 29750 Query 97327 CGGACGAGA 97335 |||| |||| Sbjct 29749 CGGAGGAGA 29741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043202384520