Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq1207 120 7e-22 >seq1 Length=85208 Score = 127 bits (140), Expect = 5e-24 Identities = 360/549 (66%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| ||| ||| || ||||| ||||| | ||| || | || ||||| ||| Sbjct 27939 ATGTACAAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGGAGATCGACCTGTCCCGGGAC 27880 Query 268802 TTAATAGATTGGA---AAAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCT 268857 | || |||| | || | | | | || |||||| ||| | || || |||| Sbjct 27879 ATGGCCGACTGGAGGGAGAAGCTGAC-CGACAACGAAAGACACTTTCTGTCGCATGTTCT 27821 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 ||| |||||||||| || || || || || || || || | ||| |||||| || Sbjct 27820 TGCCTTTTTTGCAGCAAGCGACGGGATAGTCCTGGAGAACCTGATCGAGCGGTTCTGCCA 27761 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||||| || || || | ||||||||||| ||||||||| || || || || Sbjct 27760 GGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCCAGATAATGATCGAGAACAT 27701 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || || ||| ||||||| | | || || || || || || || | | ||| ||| | Sbjct 27700 CCACTCCGAGGTGTACAGCTTGCTCATTGACACGTACATCGAGGACACCGCCGAGAAGGA 27641 Query 269038 AAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCT 269097 || || || | | || ||| | | || | | || | || ||| | | Sbjct 27640 CAGGCTTTTCAATGCGATCGAAACACTTCCGTACGTCAAGGAGAAGGCCGACTGGACGAT 27581 Query 269098 GAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGT 269154 | ||||| || || || | || | | | | || | ||||| | || || || Sbjct 27580 CAGGTGGATCAAGGACAGGGAGACGACCTTCCCCGTGCGGCTTGTTGCAATCGCAGCAGT 27521 Query 269155 AGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCT 269214 || || || ||||| ||||| | ||||| || ||||| ||| ||||||| | ||||| Sbjct 27520 CGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCTTCTGGCTGAAGAAGCGGGGCCT 27461 Query 269215 TATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGA 269274 |||| || | || ||||| ||||| |||| ||| ||||||| || | ||| |||| Sbjct 27460 GCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCCGGGACGAGGGAGTGCACCGCGA 27401 Query 269275 CTTCGCTTG 269283 ||| || || Sbjct 27400 CTTTGCGTG 27392 >seq1207 Length=23098 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| ||||| || || ||||| || || ||||| ||||| || Sbjct 18548 ACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCC 18607 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || ||||| || ||||| || | ||| || || || || ||||||||||| ||||| Sbjct 18608 AGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGT 18667 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||||| || || || | | ||| | || ||||| || || || ||||| Sbjct 18668 ATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTT 18727 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| |||||||| Sbjct 18728 CCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372922791716