Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq779 113 3e-20 seq1675 91.5 1e-13 >seq779 Length=31144 Score = 113 bits (124), Expect = 3e-20 Identities = 309/471 (66%), Gaps = 17/471 (4%) Strand=Plus/Minus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| || |||||||| | ||| |||||||| || || || ||| Sbjct 16131 GGGAAAGGC-CTTGGCTCCCTTCTGCACTGCTCCTTCAGCGACAAAACATGGTCGGTGTA 16073 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 || ||| | ||| || | | ||| |||||||| || | ||| || || || | || || Sbjct 16072 GATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTGCGC 16013 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 | |||||||| |||| ||||| || ||||| || || || || | ||| ||||| Sbjct 16012 GACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGATGTC 15953 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 ||| |||| |||||| ||| || |||| |||| || |||||||| ||| Sbjct 15952 CCCA-GACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAACA 15894 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 || |||||| |||||| | || || | | || ||||| || | || | Sbjct 15893 GCGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTGCAACGGGATTCCACGCACTGACAA 15834 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGT---------TTTGCA 25738 || | |||||| | || | |||| | ||| |||| |||||| Sbjct 15833 CCATCCGCCTGTCGT--GGATGTTCCCGCTTTTTATC----GTGTCAATCACCTTTTGCA 15780 Query 25739 GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 25798 ||||||| ||||| ||| | |||||| | |||| ||||||| || || |||| Sbjct 15779 GCTGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAAAAT 15720 Query 25799 ACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCT 25849 |||||||||||| |||||||| || || || || || || ||||||| || Sbjct 15719 GCCTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669 >seq1675 Length=15499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/155 (76%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 44396 CACCCAGAGATGGGCGACAAGTTTGCGT-CGTTCACGGCGCAAAAGGGGACATGCGGAGC 44454 || || ||||| || ||||||||| | | ||||| ||| |||||| ||||| Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940 Query 44455 CGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAA-CGGGGTGGTGCCCG-ACCTCATC 44512 ||||||| | |||||||||||||| || ||| | | |||||| |||||| || | ||| Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882 Query 44513 ATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 44547 || ||||| |||| ||| || |||||||||||||| Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340130440847571