Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 8e-23
seq1207 96.9 3e-15
>seq1
Length=85208
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | ||||||||||| || |||||||| ||| |
Sbjct 80266 CCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 80325
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | |||||| |||||||| || ||| | || | | ||||||||| || |||
Sbjct 80326 AGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGG 80385
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| |||||||| |||||| ||||| | ||| | | |||| || ||||
Sbjct 80386 ATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACC 80445
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || || || || || || || ||||| ||||||||
Sbjct 80446 TCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCAT 80492
>seq1207
Length=23098
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
||||| ||||| || |||||||| || | || | | |||||| |||||||| |||
Sbjct 18560 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCT 18619
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| | || | |||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 18620 GCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTG 18679
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| ||| | | |||| || || | || | || | || || ||||| || ||
Sbjct 18680 ACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTC 18739
Query 131218 TTTACGAAAATCTGCATG 131235
|| || || |||||||||
Sbjct 18740 TTCACAAAGATCTGCATG 18757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472002610423680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |