Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=85208 Score = 107 bits (118), Expect = 2e-18 Identities = 370/570 (65%), Gaps = 9/570 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||||||||||||| || | || ||||| || |||| ||| || ||| || | Sbjct 27391 GCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAG 27450 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| || || ||||| ||||| || || | |||||| || || || || Sbjct 27451 CCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAA 27510 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAAT-TACTG 93268 || || || || ||||| | ||| |||| || ||| || | | | | | || Sbjct 27511 GATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCCT- 27569 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 ||||||| | | | ||| ||||| || | ||| | | || ||||||||||| || Sbjct 27570 -TGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCA 27628 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAAT-CTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || || |||| | | | |||| ||||| || || || | || || Sbjct 27629 TTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCG-ATGTACGTGTCAATGAGCAAGCTGTA 27687 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 || || || |||| ||||| || || ||||| ||||| ||||| | || || | Sbjct 27688 CACCTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGG 27747 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 |||||| || || || | || | ||| | || || || |||||| || ||| ||| Sbjct 27748 GATCTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGC 27807 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC--- 93564 ||||||||| || | | |||| | ||| ||| | || | || | ||||| || Sbjct 27808 TGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCT 27867 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| |||| | || || || |||| || || | ||||| || || || || | Sbjct 27868 CCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGA 27927 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATA 93654 | |||||||| ||||| ||||| || || Sbjct 27928 CTGCTTGTACATGTCCCAGATGTCGTGGTA 27957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848778767480