Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq601 147 4e-30 seq1173 89.7 1e-12 >seq601 Length=35606 Score = 147 bits (162), Expect = 4e-30 Identities = 211/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||||||| |||||||||| || || ||||||| || | ||| || ||||| Sbjct 30193 GACTTCATCAACAAGGAGCTGATCCTCTTCTCGCATGCAGACAATGTGCGGTCGATTCCG 30252 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTT-GCCGCATTCAAGCG 218636 || ||| || || |||||||| |||||| ||||| |||| || || |||||||| Sbjct 30253 TCCGCGGTCGACGGGCTCAAGCCTGGGCAGCGGAAGATTCTCTACAGCTGC-TTCAAGCG 30311 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||||||| || || |||||||| |||||| || ||||| | || |||| Sbjct 30312 GAACCTGCAGGCCGAGATCAAGGTCGCGCAGTTTGTCGGGTATGTTGCGGAGCACTCTGC 30371 Query 218697 CTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||| ||||| ||||| || | |||| | ||||||| || ||||||||| ||| || Sbjct 30372 ATACCACCACGGGGAGCATAGCCTTGCATCG-ACCATTGTCGGGATGGCACAGAACTTTG 30430 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 | ||||| |||||| |||| ||||| || ||||| ||||| || |||| Sbjct 30431 TTGGCAGCAACAACGTGAATCTGCTGTCGCCAAACGGGCAGTTCGGGACTCG 30482 >seq1173 Length=23311 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||||||||||||| || || |||| || |||||||||||||| | Sbjct 18309 GCCCGGTTAGCTCAGTCGGTAGAGCGTGAGGCTTTTAACCTTAAGGTCGTGGGTTCGACC 18368 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 18369 CCCACATCGGGC 18380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027814056862407