Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 4e-36
seq1550 156 8e-33
seq1207 152 9e-32
seq1173 98.7 2e-15
>seq1
Length=85208
Score = 167 bits (184), Expect = 4e-36
Identities = 163/209 (78%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313
|||| || ||||| ||||| || |||||||| || ||||| ||||| || || || || |
Sbjct 80285 CAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGA 80344
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
|||||| || ||||| |||||||| || ||||| || || || || || ||||| || |
Sbjct 80345 GCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGA 80404
Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433
| ||||||||||| | |||||| | || ||||| || || || | |||||| || || |
Sbjct 80405 TTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCC 80464
Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || || ||||||||||| |||||||||
Sbjct 80465 CTGTCAGTGTCTTGACGAAGATCTGCATT 80493
Score = 120 bits (132), Expect = 6e-22
Identities = 566/882 (64%), Gaps = 33/882 (4%)
Strand=Plus/Plus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
||||| | |||| |||||||||| || || |||| ||||||||| || || ||
Sbjct 27092 ACGCCAGACTTCCGGTACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGC 27151
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCA---AACTGCTTGGGGTAACCG 10055
|||||| ||||| ||||| || ||||||||| | |||| || | || ||
Sbjct 27152 GAAATGTTTTCCATAAAGTCGAACGGGTTCTCGCTGTTGTATAACTTCTCGCAGT---CG 27208
Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115
|| | | || || |||| || || ||||||||||||||| ||| || | ||||
Sbjct 27209 AGCTCGGAGAGAAGATGGTCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTC 27268
Query 10116 ATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|| || |||| ||| | ||| | ||| |||| | ||| | || | | || ||
Sbjct 27269 ATCCCGATCA-GCGAGACGGGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGC 27327
Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGA-GCTTCGAATACA 10233
|| || |||||| | | || || | ||| ||||||||| || | || || ||
Sbjct 27328 CTCGCGGATGATGCTTTGGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCCGCAT-CA 27386
Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293
| || |||| | |||| | |||||||| |||||||| | |||||| || ||
Sbjct 27387 GCAGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGG 27446
Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCCGGAG 10352
||| || |||| || ||||| || ||||||||| || || ||| |||| || |||
Sbjct 27447 TCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCA-AACGCGCCCGAG 27505
Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410
| |||||| ||||| || | || || || ||| | | |||| | ||| |
Sbjct 27506 A--AGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAG--GTCGTCTC 27561
Query 10411 GCGAAAAGTATTTC----GA-GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465
| | | | || | ||| | ||||||| ||| || | || ||
Sbjct 27562 CCTGTCCTTGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTC 27621
Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAG 10525
||| || | ||| ||| ||| ||||| |||||| || | |||| |||||
Sbjct 27622 GATCGCATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAA 27681
Query 10526 GGAGTATTGCTCGCTGTGGACGCTC----TCATTGTACCCCTGGTAAGCGTAGAACATAC 10581
| ||| |||| ||||| | || ||||| | |||| | |||| || |
Sbjct 27682 GCTGTACACCTCGGAGTGGATGTTCTCGATCATTAT----CTGGAACCCGTAAAAACACC 27737
Query 10582 GTGCCGAGGGGTCCGTGACTTCCTCGGCA-AAGTTGTTGTTCAGGTTCTCCATCACCATG 10640
| ||| |||| | ||| |||| |||| || | | |||||||||||| || ||
Sbjct 27738 GCGCCTCGGGGATCTGGACCTCCT-GGCAGAACCGCTCGATCAGGTTCTCCAGGACTATC 27796
Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700
|| ||||| ||||||| ||| | || | ||| | ||||| | || | ||| ||
Sbjct 27797 CCGTCGCTTGCTGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTC 27856
Query 10701 AGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760
|| || || | |||||| ||| ||| || || | || |||||| | |||||||||
Sbjct 27857 AGCTTCTCCCTCCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAA 27916
Query 10761 GTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTAC 10802
| || ||| || ||||||||| | | |||||| |||||
Sbjct 27917 GACGCCTCGGACTGCTTGTACATGTCCCAGATGTCGTGGTAC 27958
>seq1550
Length=17363
Score = 156 bits (172), Expect = 8e-33
Identities = 249/350 (71%), Gaps = 12/350 (3%)
Strand=Plus/Minus
Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306
||||| || |||||||| | ||||||||||| | || || ||||| ||||| ||||||
Sbjct 12198 TGGAGGATCATCCACATTCCCTCGACATAGTCTCTTGCGTGTCCCCAGTCGCGTTTTGCG 12139
Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAA-GACCGCG 268365
| | ||| || || | ||||| |||| || || || | | ||| | | || |
Sbjct 12138 TTGAGGTTTCCCAGATAGAGGCAGCTCTGTTTTCCCAGGTGGATTTTTGCGACGGCCTCT 12079
Query 268366 AGTGATTTTTCGGGTCACGAA-CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGA 268424
||||| || || || || || || || || | | ||||| ||||||||||||||||
Sbjct 12078 -GTGATCTTCCGTGTGACAAAGCGCCTTCCC-CTCCGCGGGCTTTCGTGGTTGAAGAGGA 12021
Query 268425 TGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAA 268484
| ||||| | ||| ||| || |||||||| | |||||| | ||| |||||||||| |
Sbjct 12020 TCCCGTTTGATGCGTGCATCCCGTATGCCTCTCTGTAGTTGATTACCATCCAGTATGCGA 11961
Query 268485 ACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGA-GGG 268543
| | ||||| || |||||||| || || |||| |||||| || || || || ||
Sbjct 11960 AGAGCTTTGAGACGGCGTACGGGGAGCGGGGATAGAAGGGGGTTGT----TTCAGATTGG 11905
Query 268544 A---TTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590
| ||||| || ||| || | ||||| ||| | ||||| ||||||||
Sbjct 11904 ATTTTTTCTGTGATTTTCCCGTACAGCTCCGAGCTTGATGCCTGGTAGAA 11855
>seq1207
Length=23098
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || | ||| || | || ||||| || || || |||||||| || || |||
Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| ||||| || || | |||||| || ||||| || |||| || ||||| || ||
Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||| || || ||||||||||||| |||||| | || || || || ||
Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || || ||||| || || ||||||||
Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq1173
Length=23311
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| |
Sbjct 18309 GCCCGGTTAGCTCAGTCGGTAGAGCGTGAGGCTTTTAACCTTAAGGTCGTGGGTTCGACC 18368
Query 84516 CCCACATCGGGC 84527
||||||||||||
Sbjct 18369 CCCACATCGGGC 18380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921602504476440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |