Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 167 4e-36 seq1550 156 8e-33 seq1207 152 9e-32 seq1173 98.7 2e-15 >seq1 Length=85208 Score = 167 bits (184), Expect = 4e-36 Identities = 163/209 (78%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || ||||| ||||| || |||||||| || ||||| ||||| || || || || | Sbjct 80285 CAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGA 80344 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || ||||| |||||||| || ||||| || || || || || ||||| || | Sbjct 80345 GCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGA 80404 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | ||||||||||| | |||||| | || ||||| || || || | |||||| || || | Sbjct 80405 TTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCC 80464 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || ||||||||||| ||||||||| Sbjct 80465 CTGTCAGTGTCTTGACGAAGATCTGCATT 80493 Score = 120 bits (132), Expect = 6e-22 Identities = 566/882 (64%), Gaps = 33/882 (4%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 ||||| | |||| |||||||||| || || |||| ||||||||| || || || Sbjct 27092 ACGCCAGACTTCCGGTACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGC 27151 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCA---AACTGCTTGGGGTAACCG 10055 |||||| ||||| ||||| || ||||||||| | |||| || | || || Sbjct 27152 GAAATGTTTTCCATAAAGTCGAACGGGTTCTCGCTGTTGTATAACTTCTCGCAGT---CG 27208 Query 10056 AGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTC 10115 || | | || || |||| || || ||||||||||||||| ||| || | |||| Sbjct 27209 AGCTCGGAGAGAAGATGGTCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTC 27268 Query 10116 ATGCCAATCATGCG-GCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 || || |||| ||| | ||| | ||| |||| | ||| | || | | || || Sbjct 27269 ATCCCGATCA-GCGAGACGGGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGC 27327 Query 10175 TTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGA-GCTTCGAATACA 10233 || || |||||| | | || || | ||| ||||||||| || | || || || Sbjct 27328 CTCGCGGATGATGCTTTGGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCCGCAT-CA 27386 Query 10234 GGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || |||| | |||| | |||||||| |||||||| | |||||| || || Sbjct 27387 GCAGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGG 27446 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGC-GCAGAACGACCCGGAG 10352 ||| || |||| || ||||| || ||||||||| || || ||| |||| || ||| Sbjct 27447 TCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCA-AACGCGCCCGAG 27505 Query 10353 AACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410 | |||||| ||||| || | || || || ||| | | |||| | ||| | Sbjct 27506 A--AGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAG--GTCGTCTC 27561 Query 10411 GCGAAAAGTATTTC----GA-GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTC 10465 | | | | || | ||| | ||||||| ||| || | || || Sbjct 27562 CCTGTCCTTGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTC 27621 Query 10466 GATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAG 10525 ||| || | ||| ||| ||| ||||| |||||| || | |||| ||||| Sbjct 27622 GATCGCATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAA 27681 Query 10526 GGAGTATTGCTCGCTGTGGACGCTC----TCATTGTACCCCTGGTAAGCGTAGAACATAC 10581 | ||| |||| ||||| | || ||||| | |||| | |||| || | Sbjct 27682 GCTGTACACCTCGGAGTGGATGTTCTCGATCATTAT----CTGGAACCCGTAAAAACACC 27737 Query 10582 GTGCCGAGGGGTCCGTGACTTCCTCGGCA-AAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 | ||| |||| | ||| |||| |||| || | | |||||||||||| || || Sbjct 27738 GCGCCTCGGGGATCTGGACCTCCT-GGCAGAACCGCTCGATCAGGTTCTCCAGGACTATC 27796 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 || ||||| ||||||| ||| | || | ||| | ||||| | || | ||| || Sbjct 27797 CCGTCGCTTGCTGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTC 27856 Query 10701 AGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 || || || | |||||| ||| ||| || || | || |||||| | ||||||||| Sbjct 27857 AGCTTCTCCCTCCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAA 27916 Query 10761 GTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTAC 10802 | || ||| || ||||||||| | | |||||| ||||| Sbjct 27917 GACGCCTCGGACTGCTTGTACATGTCCCAGATGTCGTGGTAC 27958 >seq1550 Length=17363 Score = 156 bits (172), Expect = 8e-33 Identities = 249/350 (71%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 ||||| || |||||||| | ||||||||||| | || || ||||| ||||| |||||| Sbjct 12198 TGGAGGATCATCCACATTCCCTCGACATAGTCTCTTGCGTGTCCCCAGTCGCGTTTTGCG 12139 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAA-GACCGCG 268365 | | ||| || || | ||||| |||| || || || | | ||| | | || | Sbjct 12138 TTGAGGTTTCCCAGATAGAGGCAGCTCTGTTTTCCCAGGTGGATTTTTGCGACGGCCTCT 12079 Query 268366 AGTGATTTTTCGGGTCACGAA-CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGA 268424 ||||| || || || || || || || || | | ||||| |||||||||||||||| Sbjct 12078 -GTGATCTTCCGTGTGACAAAGCGCCTTCCC-CTCCGCGGGCTTTCGTGGTTGAAGAGGA 12021 Query 268425 TGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAA 268484 | ||||| | ||| ||| || |||||||| | |||||| | ||| |||||||||| | Sbjct 12020 TCCCGTTTGATGCGTGCATCCCGTATGCCTCTCTGTAGTTGATTACCATCCAGTATGCGA 11961 Query 268485 ACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGA-GGG 268543 | | ||||| || |||||||| || || |||| |||||| || || || || || Sbjct 11960 AGAGCTTTGAGACGGCGTACGGGGAGCGGGGATAGAAGGGGGTTGT----TTCAGATTGG 11905 Query 268544 A---TTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590 | ||||| || ||| || | ||||| ||| | ||||| |||||||| Sbjct 11904 ATTTTTTCTGTGATTTTCCCGTACAGCTCCGAGCTTGATGCCTGGTAGAA 11855 >seq1207 Length=23098 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| || | || ||||| || || || |||||||| || || ||| Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| ||||| || || | |||||| || ||||| || |||| || ||||| || || Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || || ||||||||||||| |||||| | || || || || || Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || || ||||| || || |||||||| Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 >seq1173 Length=23311 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||| | Sbjct 18309 GCCCGGTTAGCTCAGTCGGTAGAGCGTGAGGCTTTTAACCTTAAGGTCGTGGGTTCGACC 18368 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 18369 CCCACATCGGGC 18380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921602504476440