Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 381 1e-100 seq655 223 7e-53 >seq1 Length=85208 Score = 381 bits (422), Expect = 1e-100 Identities = 605/862 (70%), Gaps = 14/862 (2%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || |||| ||||||||| |||||||||| || | || || |||||| || |||| Sbjct 27959 AGTACCACGACATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGG 27900 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGG---GAGTCACTGTCTGAGAACGAAAAGT 42405 |||| |||||| || ||||| ||||| |||| ||| ||| | || ||||||| Sbjct 27899 AGATCGACCTGTCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCGACAACGAAAGAC 27840 Query 42406 TTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACC 42465 || || | | || ||||| || || || ||||| |||||| ||||||| Sbjct 27839 ACTTTCTGTCGCATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAGTCCTGGAGAACC 27780 Query 42466 TGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCC 42525 || | ||||| | ||||| ||| | |||||||| || || ||||| |||| Sbjct 27779 TGATCGAGCGGTTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCC 27720 Query 42526 AGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACA 42582 ||||| || |||||| | ||||| ||||||||| | |||||| ||||||||| Sbjct 27719 AGATAATGATCGAGAACATCCACTCCGAGGTGTACAGCT---TGCTCATTGACACGTACA 27663 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| |||| || |||| ||||| || || || || | || | | ||| Sbjct 27662 TCGAGGACACCGCCGAGAAGGACAGGCTTTTCAATGCGATCGAAACACTTCCGTACGTCA 27603 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 || ||||||| |||||| || ||| |||||| || || | || ||| || | Sbjct 27602 AGGAGAAGGCCGACTGGACGATCAGGTGGATCAAGGACAGGGAGACGACCTTCCCCGTGC 27543 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 |||| || || | | || |||||||| ||||||||||||||||| || || | |||| Sbjct 27542 GGCTTGTTGCAATCGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCT 27483 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||| ||| || || | |||| || || |||||||||||||| || |||||| Sbjct 27482 TCTGGCTGAAGAAGCGGGGCCTGCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCC 27423 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 |||||||||| |||| | |||||||| ||||| ||| | | | ||| ||| | ||| Sbjct 27422 GGGACGAGGGAGTGCACCGCGACTTTGCGTGCCTGCTGAT---GCGGCACATCAAGAACA 27366 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 |||| ||| ||||| ||| ||||||| ||||| || ||||| ||| | | Sbjct 27365 AGCCGTCGCAGGAGGTCATCCAAAGCATCATCCGCGAGGCTGTTGAGATAGAGCACCGCT 27306 Query 42943 TCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGT 43002 | ||| || | || ||||| || ||| |||| |||||| || | ||||||||| ||| Sbjct 27305 TTCTCGGCGAGGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAAGCTCATGTGCCAGT 27246 Query 43003 ACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGAT-GGGTCTCAGCCGCCTCTACAAC 43061 ||||| |||| |||||||||||||| || | | || | | | || | | |||||| Sbjct 27245 ACATCGAGTATGTCGCCGACCATCTTCTCTCCGAGCTCGACTGCGAGAAG-TTATACAAC 27187 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | | ||| |||||||||||||| ||||| ||| || || || |||||||| | | Sbjct 27186 AGCGAGAACCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAAAACCAACTTCTAC 27127 Query 43122 GAGAAGCGCGTCGCCGACTACC 43143 ||||||||||| | || |||| Sbjct 27126 GAGAAGCGCGTGTCGGAGTACC 27105 >seq655 Length=33610 Score = 223 bits (246), Expect = 7e-53 Identities = 1163/1813 (64%), Gaps = 105/1813 (6%) Strand=Plus/Plus Query 243761 GCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGG 243820 |||| | | || | ||| ||||||||||||||||| || || | |||| ||| || | Sbjct 28828 GCGGGCATCGTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAGAAG 28887 Query 243821 TGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTG 243880 |||||| |||||| | || || || || ||| ||| | | || |||| Sbjct 28888 TGCATGCTCGTCAGGCGCGA-AT----AGGTT-GGCTCG-----GCAATGTA-GATGTTG 28935 Query 243881 AGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTC 243940 || |||||||| ||||||| | | ||| | || ||||| ||||| ||||| || |||| Sbjct 28936 AGCGACTGGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTC 28995 Query 243941 TGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATG 244000 || | ||||| || ||||| ||||| ||| || | | | |||| || ||||| Sbjct 28996 TGCGGGATCTCCCACACCGTCCGGTAGAGCCTCTTCAGCTCCGCCGGGATTGCTGCGATG 29055 Query 244001 TTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCC 244060 ||| | || || |||| | || | ||| || | | |||||||||| ||| Sbjct 29056 CGCTGGATAGACCCGTTGTCTGCTATCATCTGTGTCTTTGTCTCCGCGTTCCACAG-CCC 29114 Query 244061 AAGCGCTC-CAGCGCCTCGACCAG-GTGCCTGTTCACCACCTGAAACTCTCCCGACAGCA 244118 | || | |||| || | || | ||| ||| |||| ||| ||||| || | || | Sbjct 29115 ACGCCGGCACAGCTCCCGTATCATAGCGCC-GTTGACCATCTGGAACTCGCCAGCAAGAA 29173 Query 244119 CGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCT 244178 | || ||| |||||||||||| || |||||| | | |||||| | || || || | Sbjct 29174 CCCGACGCACATAGAGGTTGCTGGTGTACGGCTCCACGGTCTCCGAGAACCCGAGGATGT 29233 Query 244179 GCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCT 244238 || |||| || ||||||||||||| || || || ||||| || |||||| || Sbjct 29234 TCGACGTGGATGCGGTCGGCATGGGCGCAACAAGAAGCGAGTTCCGCAGCCCGTGCTCCT 29293 Query 244239 GGAT------GCGGAGTCTGAGCTCGTTCCAGTCC-CACATGCCCGAGAGGTCCTCGCGT 244291 ||| || || ||| | ||| ||| | ||| | | ||| Sbjct 29294 TGATCTTCTCCCGCAGGCTGTCCCAGTTGTTCTCCTCTGTCGCCGGGGGAGTC------- 29346 Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTC 244351 | |||||||||||| ||||||| | ||| |||||| || ||| | ||| || Sbjct 29347 ---ACGCCCCACATGTCGCACTGCAGGAAGCCCCGGCTGACTGGAGACCCCGCATAGCTC 29403 Query 244352 GGGTAG-GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGAT 244410 || ||| | || || || || |||| || | |||||||| |||| ||| | Sbjct 29404 GGATAGACGCCCTTCTCG-AGGCTGAGCTCGCACGAGGCCTCGAGGGCTGCGTGGTACAC 29462 Query 244411 GGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCAT 244470 |||||||| ||| | ||| ||| ||||| ||| || || ||| |||| || | Sbjct 29463 CGTCTCGAATATCCGCCGGTTGATGGCGCGGCCCTCCTCGGAGTCGAACGGGA---CCTT 29519 Query 244471 CA--TCA-TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTT 244527 | ||| ||| || || || ||||||||||| |||| ||| | || | ||||||| Sbjct 29520 TAGCTCACAGAAAACATCCGCAAGTCCCTGCACACCGAGGCCAAGCGGGCGGTGTCGCAG 29579 Query 244528 GTTGGAGCGC-ATGGCTTCGGGCACG-GGGTAAAAGTTGCCGTCGATCACCTTGTTGAGG 244585 ||| ||| | || |||| || | ||||| |||| |||||| | ||||| ||| Sbjct 29580 GTTCGAGGTCTTTGCCTTC--TCAAGCGGGTACCGGTTGTTGTCGATGATCTTGTCCAGG 29637 Query 244586 TTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCC 244645 || || || |||| | ||| || | ||| |||| ||| || | Sbjct 29638 TTCCGTGT-----TGCGATCTTTGTC-ACCTTGTGGAGAAGCGCGTAGTCG-AG-----C 29685 Query 244646 TCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGG-----CCAGGTTGCAG 244699 | | || ||||| | |||| || ||| | | | | || |||||| Sbjct 29686 TTGCCG-------TCCTCGATAAAC-----GACGGCAGCCCAAGAGACCCGAGATTGCAG 29733 Query 244700 ACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG 244759 || | | |||||||| |||||| ||| ||||| ||||| ||||| || | |||| Sbjct 29734 ACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCACAGGTTGCTCCCCTTG 29793 Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 || || |||||||||||||| || | ||| |||||| ||||||||||| | ||| | Sbjct 29794 ATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCCTTGTACATGATGTAC 29853 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || |||||||||| ||| ||| || | | ||| || | | ||| | Sbjct 29854 GGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGCTTCTGCGCCGGCATT 29913 Query 244880 GTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCC 244938 || || | || |||| || |||||| || |||||| |||||||| || || Sbjct 29914 GT-CTTCTTTCCCAGCCCGTCCCGCTCGTACCGCTCGTACAGCGCCTCGAAGTCCTCTCC 29972 Query 244939 CCAGACCTCGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGACTCCA-CTCGCCGCCG 244996 ||| |||| || ||| ||| | || ||| || | || |||| ||| ||| | Sbjct 29973 CCACGTCTCG-CTCAGCCCAGGCGCATCGTTCGGACAGAACAGCGTCCAGCTC-CCGTTG 30030 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 | || || | | |||| || ||||| || ||||| || || | | | ||||||| || Sbjct 30031 TTCTCCACGCGCCGCATAAACAGGTCTGGCATCCACAGCGCATAGGACAGGTCCC--GTG 30088 Query 245057 CTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | | | ||| ||| ||| ||||||||| | ||| | ||||| | || || | | Sbjct 30089 CGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGAGAGGAAGTCCAGCACATCCGCAT 30148 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174 |||| ||||| | ||||| || | ||||| || | ||| | |||||||||||| || Sbjct 30149 GCCACGGCTCGAGGTAGATCGCAAACGCGCCCGGTCTTTTGCTTCCTCCCTGGTCC-GCA 30207 Query 245175 TCCTCTCGAGCGCGTTG-----AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 | | || || ||||| |||| || || | || || || ||||| || ||| Sbjct 30208 TAC---CGTGC-CGTTGCATCAAAGACACGGAGCATCGGAACAATACCGTTTGAAACGCC 30263 Query 245230 GTTGGTGCCCTTGAT-GTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 ||| || ||| ||| || | | |||| ||| || |||| |||| || || | | Sbjct 30264 GTTTGTTCCCCGGATAAGAGACCCGCTTG-CCCGGATGTTGTGGATGTTCAGCCCGATGC 30322 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT--ATGCCCTCCAT 245346 | || | || || || || ||||| || || |||||| | || |||| ||| Sbjct 30323 CTGCGCCTGTCTGCGATATCAGCGCGCA-CT-GTGTCAGTGTCTTGTAGATCCCCTTCAT 30380 Query 245347 GCTGTC--CGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 ||| || | ||| | |||| ||||||| ||| |||||| ||| ||| Sbjct 30381 CGAGTCGTCGGC--CATCGTCAGCACAAAGCAGCTGGAAAGCTGGTTGTTGTCTTTGCCG 30438 Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTC 245464 | || | ||| || || | |||||| | |||| || | || | | | |||| ||| Sbjct 30439 GCATTCATCAGCGTCGGTGTTGCGTGGATGAAGTTCCGCCGAGACATGTGCTCGTATGTC 30498 Query 245465 TGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGC 245524 | ||| || |||| ||||||||||||| | || | ||| || ||||| Sbjct 30499 TCCAGCGCCTTCTCAATGTCCTCGCCGTGGATCTCAACTGCAACACGCATCAGCATGTGC 30558 Query 245525 TGGGGCGTCTCGA 245537 || ||| |||||| Sbjct 30559 TGCGGCCTCTCGA 30571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944318814077520