Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 140 8e-28
seq1 134 3e-26
seq601 120 7e-22
seq944 107 5e-18
>seq1207
Length=23098
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || ||||| | || ||||| | ||| ||| || ||||| || ||||| | |
Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | ||||| || | || ||||||||||| ||||| ||||| || |||
Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||||||||| ||||| ||||| || || ||| || || || ||| ||| || ||
Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||||| ||||| |||||||| ||||| || || ||||||||
Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq1
Length=85208
Score = 134 bits (148), Expect = 3e-26
Identities = 169/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||| | ||| || || ||||| || |||||||
Sbjct 80266 CCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 80325
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | |||||| || | || ||||| ||||| || || | ||| || ||||||
Sbjct 80326 AGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGG---TCTGGG 80382
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| ||||| ||||||||||| || || || || || || ||| || ||
Sbjct 80383 GGGATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCG 80442
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| ||||| |||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 80443 ACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCATT 80493
>seq601
Length=35606
Score = 120 bits (132), Expect = 7e-22
Identities = 259/377 (69%), Gaps = 14/377 (4%)
Strand=Plus/Minus
Query 326054 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 326113
||||| | ||||| ||| ||||||||| ||||||||||| ||||| || ||||||
Sbjct 29783 ATGTGCGACCCGTCGTGGTCCTGGTCGGTCATTATCATCACATGCCCGTACCGCAGCGAG 29724
Query 326114 GACGTGTCTTTGTACACTTTACCGGTT--TGAAGGCCGAGAATTTGTTTGAGCGCTGT-G 326170
|| | | |||| | || | || || || || ||||| | |||| ||||| |
Sbjct 29723 TCCGCGGTCTGGTACTCCTT--CTTTTGCTGCAGCCCAAGAATCTTCTTGAT-GCTGTTG 29667
Query 326171 ATTTCTTCGTTCTTCGTGA--TGCTTGCCACGGATG-CATCGCGGACGTTCAATAGTTTT 326227
| || |||||| | | | |||||| | ||| | || ||||| |||| || |||
Sbjct 29666 ACCTCGGCGTTCTCCATCAGCTGCTTGG---GCATGGCCTCCCGGACATTCAGGAGCTTT 29610
Query 326228 CCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCA 326287
|| || ||||||||||| || || | |||| ||||| |||| |||||| || ||||||
Sbjct 29609 CCCCGCAGAGGGAACACCCCGTAGTTTGCGCGCCCGACAACGGCCAGCCCCGCAATTGCA 29550
Query 326288 AGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGC-TGTTATTCGT 326346
|| | | || || |||||||| || ||||| || ||||| | || | || ||
Sbjct 29549 AGCGCCTTGGCAGAGTCCCCCTCGGTGAGAATCAGCGTGCA-GTCCCGCGCATCCTTTGT 29491
Query 326347 TCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACC 326406
|| || | ||||||| ||| || || || || |||| || || ||| ||
Sbjct 29490 CCCGGCGTTGTTCGCATCGTCGAGCTTCGGGATCCCCGTCAGCCGTATGCGCTTCTGCCC 29431
Query 326407 GTCGGTCTTCTTCAGCT 326423
||| |||||||||||||
Sbjct 29430 GTCCGTCTTCTTCAGCT 29414
>seq944
Length=26795
Score = 107 bits (118), Expect = 5e-18
Identities = 144/199 (72%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || ||||| | ||| || | ||||||||| | || || || |||||
Sbjct 9446 TTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAA 9505
Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| | ||| ||| ||||| |||||| || || ||||||||||| | || ||
Sbjct 9506 TATCAGTCTCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGGATTTTTGTCTTGAC 9562
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || ||| | || || ||||| ||||| || || || ||||| |||||
Sbjct 9563 AGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTT 9622
Query 288459 GACGAATATCTGCATTATG 288477
||||| ||||||||| ||
Sbjct 9623 TACGAAGATCTGCATTGTG 9641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179628297565906
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |