Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1207 140 8e-28 seq1 134 3e-26 seq601 120 7e-22 seq944 107 5e-18 >seq1207 Length=23098 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | || ||||| | ||| ||| || ||||| || ||||| | | Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||| || | || ||||||||||| ||||| ||||| || ||| Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| ||||| ||||| || || ||| || || || ||| ||| || || Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| |||||||| ||||| || || |||||||| Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 >seq1 Length=85208 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | ||| || || ||||| || ||||||| Sbjct 80266 CCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 80325 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||| || | || ||||| ||||| || || | ||| || |||||| Sbjct 80326 AGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGG---TCTGGG 80382 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||||||||| || || || || || || ||| || || Sbjct 80383 GGGATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCG 80442 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| |||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 80443 ACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCATT 80493 >seq601 Length=35606 Score = 120 bits (132), Expect = 7e-22 Identities = 259/377 (69%), Gaps = 14/377 (4%) Strand=Plus/Minus Query 326054 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 326113 ||||| | ||||| ||| ||||||||| ||||||||||| ||||| || |||||| Sbjct 29783 ATGTGCGACCCGTCGTGGTCCTGGTCGGTCATTATCATCACATGCCCGTACCGCAGCGAG 29724 Query 326114 GACGTGTCTTTGTACACTTTACCGGTT--TGAAGGCCGAGAATTTGTTTGAGCGCTGT-G 326170 || | | |||| | || | || || || || ||||| | |||| ||||| | Sbjct 29723 TCCGCGGTCTGGTACTCCTT--CTTTTGCTGCAGCCCAAGAATCTTCTTGAT-GCTGTTG 29667 Query 326171 ATTTCTTCGTTCTTCGTGA--TGCTTGCCACGGATG-CATCGCGGACGTTCAATAGTTTT 326227 | || |||||| | | | |||||| | ||| | || ||||| |||| || ||| Sbjct 29666 ACCTCGGCGTTCTCCATCAGCTGCTTGG---GCATGGCCTCCCGGACATTCAGGAGCTTT 29610 Query 326228 CCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCA 326287 || || ||||||||||| || || | |||| ||||| |||| |||||| || |||||| Sbjct 29609 CCCCGCAGAGGGAACACCCCGTAGTTTGCGCGCCCGACAACGGCCAGCCCCGCAATTGCA 29550 Query 326288 AGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGC-TGTTATTCGT 326346 || | | || || |||||||| || ||||| || ||||| | || | || || Sbjct 29549 AGCGCCTTGGCAGAGTCCCCCTCGGTGAGAATCAGCGTGCA-GTCCCGCGCATCCTTTGT 29491 Query 326347 TCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACC 326406 || || | ||||||| ||| || || || || |||| || || ||| || Sbjct 29490 CCCGGCGTTGTTCGCATCGTCGAGCTTCGGGATCCCCGTCAGCCGTATGCGCTTCTGCCC 29431 Query 326407 GTCGGTCTTCTTCAGCT 326423 ||| ||||||||||||| Sbjct 29430 GTCCGTCTTCTTCAGCT 29414 >seq944 Length=26795 Score = 107 bits (118), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | ||| || | ||||||||| | || || || ||||| Sbjct 9446 TTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAA 9505 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| ||||| |||||| || || ||||||||||| | || || Sbjct 9506 TATCAGTCTCTGCTGA---TCTGGCGGGATTCCCTCCTTGTCCTGGATTTTTGTCTTGAC 9562 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || ||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 9563 AGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTT 9622 Query 288459 GACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 9623 TACGAAGATCTGCATTGTG 9641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628297565906