Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq601 125 2e-23 seq1 91.5 3e-13 >seq601 Length=35606 Score = 125 bits (138), Expect = 2e-23 Identities = 260/377 (69%), Gaps = 14/377 (4%) Strand=Plus/Minus Query 298175 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 298234 ||||| | ||||| ||| ||||||||| ||||||||||| ||||| || |||||| Sbjct 29783 ATGTGCGACCCGTCGTGGTCCTGGTCGGTCATTATCATCACATGCCCGTACCGCAGCGAG 29724 Query 298235 GACGTGTCTTTGTACACTTTACCGGTT--TGAAGGCCGAGAATTTGTTTGAGCGCTGT-G 298291 || | | |||| | || | || || || || ||||| | |||| ||||| | Sbjct 29723 TCCGCGGTCTGGTACTCCTT--CTTTTGCTGCAGCCCAAGAATCTTCTTGAT-GCTGTTG 29667 Query 298292 ATTTCTTCGTTCTTCGTGA--TGCTTGCCACGGATG-CATCGCGGACATTCAATAGTTTT 298348 | || |||||| | | | |||||| | ||| | || |||||||||| || ||| Sbjct 29666 ACCTCGGCGTTCTCCATCAGCTGCTTGG---GCATGGCCTCCCGGACATTCAGGAGCTTT 29610 Query 298349 CCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCA 298408 || || ||||||||||| || || | |||| ||||| |||| |||||| || |||||| Sbjct 29609 CCCCGCAGAGGGAACACCCCGTAGTTTGCGCGCCCGACAACGGCCAGCCCCGCAATTGCA 29550 Query 298409 AGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCACATTTTGC-TGTTATTCGT 298467 || | | || || |||||||| || ||||| || ||||| | || | || || Sbjct 29549 AGCGCCTTGGCAGAGTCCCCCTCGGTGAGAATCAGCGTGCA-GTCCCGCGCATCCTTTGT 29491 Query 298468 TCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCACTCGGATCTTCTTGGTACC 298527 || || | ||||||| ||| || || || || |||| || || ||| || Sbjct 29490 CCCGGCGTTGTTCGCATCGTCGAGCTTCGGGATCCCCGTCAGCCGTATGCGCTTCTGCCC 29431 Query 298528 GTCGGTCTTCTTCAGCT 298544 ||| ||||||||||||| Sbjct 29430 GTCCGTCTTCTTCAGCT 29414 >seq1 Length=85208 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || || |||||| | |||||| | ||||||||||| | || ||||||| | Sbjct 27280 GCTGATCGGGATGAACAACAAGCTCATGTGCCAGTACATCGAGTATGTCGCCGACCATCT 27221 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | || || ||| | | ||||| | |||||| | ||||||| || | ||||||||| Sbjct 27220 TCTCTCCGAGCTCGACTGCGAGAAGTTATACAACAGCGAGAACCCGTTCGACTTTATGGA 27161 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||||||| |||||||| ||||||| ||| ||||| || Sbjct 27160 AAACATTTCGCTGATCGGGAAAACCAACTTCTACGAGAAGCGCGT 27116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102855596367450