Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq944 123 3e-23 seq1207 96.9 4e-15 >seq944 Length=26795 Score = 123 bits (136), Expect = 3e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| ||| | || | ||| |||||||| || ||||| || | Sbjct 9410 ACCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGA 9469 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || |||||||| ||||||||||| |||| |||||| || | || Sbjct 9470 GAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGG 9529 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTG--AGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||||||| ||| || |||| | | ||| | ||| Sbjct 9530 GATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCG--ATGGATTCGGATGCATCC 9587 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || |||| ||||| |||||||| || ||||||||||| ||||| |||||| Sbjct 9588 ACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638 >seq1207 Length=23098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || | | |||| || |||||||| || ||||| Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||||||||||||| | || | | || |||||| |||||| |||| | | Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGAC 18685 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || ||| ||| || || || | |||||| || || || || || ||||| ||| Sbjct 18686 TCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACA 18745 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 18746 AAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201073393680