Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
seq655 91.5 1e-13
seq944 86.0 6e-12
>seq1
Length=85208
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 47379 TTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAG 47438
||| ||| |||||| || |||| || | | || |||||| || | ||| | ||
Sbjct 27306 TTTCTCGGCGAGGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAAGCTCATGTGCCAG 27247
Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCAC 47498
|||||||| | ||||||||||| || ||| |||| | | ||| | ||| ||
Sbjct 27246 TACATCGAGTATGTCGCCGACCATCTTCTCTCCGAGCTCGACTGCGAGAAGTTATACAAC 27187
Query 47499 ACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTC 47558
| |||||| || ||||| |||||| | ||||||||||| || || |||||||| | |
Sbjct 27186 AGCGAGAACCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAAAACCAACTTCTAC 27127
Query 47559 GAGAAGCGCGT 47569
|||||||||||
Sbjct 27126 GAGAAGCGCGT 27116
>seq655
Length=33610
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778
|||||||||||||| | || | | || || | || ||||||||||||||||||||
Sbjct 28800 GTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGT 28859
Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTTC 145838
||| ||| |||| ||| ||| ||||| ||||||| || | ||| || || || ||
Sbjct 28860 CTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTC 28919
Query 145839 GGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCAT 145898
||| | | | || || || ||||| || || ||| | || | ||||| || |||||
Sbjct 28920 GGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCAT 28979
>seq944
Length=26795
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| | |||| || ||||||||| || || || |||||||||
Sbjct 9483 TCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTG 9542
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| |||||| ||||| |||| || || | || || |||| || |
Sbjct 9543 TCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATT 9602
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||| ||||| || ||||| || ||||||||
Sbjct 9603 GTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475490535126480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |