Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq655 91.5 1e-13 seq944 86.0 6e-12 >seq1 Length=85208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 47379 TTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAG 47438 ||| ||| |||||| || |||| || | | || |||||| || | ||| | || Sbjct 27306 TTTCTCGGCGAGGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAAGCTCATGTGCCAG 27247 Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCAC 47498 |||||||| | ||||||||||| || ||| |||| | | ||| | ||| || Sbjct 27246 TACATCGAGTATGTCGCCGACCATCTTCTCTCCGAGCTCGACTGCGAGAAGTTATACAAC 27187 Query 47499 ACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTC 47558 | |||||| || ||||| |||||| | ||||||||||| || || |||||||| | | Sbjct 27186 AGCGAGAACCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAAAACCAACTTCTAC 27127 Query 47559 GAGAAGCGCGT 47569 ||||||||||| Sbjct 27126 GAGAAGCGCGT 27116 >seq655 Length=33610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 |||||||||||||| | || | | || || | || |||||||||||||||||||| Sbjct 28800 GTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGT 28859 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTTC 145838 ||| ||| |||| ||| ||| ||||| ||||||| || | ||| || || || || Sbjct 28860 CTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTC 28919 Query 145839 GGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCAT 145898 ||| | | | || || || ||||| || || ||| | || | ||||| || ||||| Sbjct 28920 GGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCAT 28979 >seq944 Length=26795 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | |||| || ||||||||| || || || ||||||||| Sbjct 9483 TCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTG 9542 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||||| |||| || || | || || |||| || | Sbjct 9543 TCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATT 9602 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| ||||| || ||||| || |||||||| Sbjct 9603 GTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490535126480