Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1207 113 4e-20 seq1 84.2 2e-11 seq944 82.4 7e-11 >seq1207 Length=23098 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || ||||| || ||||| ||||| |||||||| ||||| || || || | Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||| || ||||||||| | |||| ||| ||||||||||| || Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| || || |||||| |||| | || | | |||| || || || Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||| || || || ||||| || ||||| Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 >seq1 Length=85208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||||||| || ||||| ||||| || || ||| | ||| | || || Sbjct 80284 ACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCG 80343 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| ||| | || | || |||||||| || || || || ||||| || || Sbjct 80344 AGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGG 80403 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| |||| || || | | |||| || ||||| ||||| || | ||| || Sbjct 80404 ATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTC 80463 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 80464 CCTGTCAGTGTCTTGACGAAGATCTGCAT 80492 >seq944 Length=26795 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 || ||| || || || || ||||||||||| || || || || || ||| | || Sbjct 9425 CAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTC 9484 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || || || ||| |||||| || ||||| || ||||| || || || || || Sbjct 9485 TTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTC 9544 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 || |||||| |||| | || | || ||||| | || || ||||| || | || Sbjct 9545 CTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGT 9604 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || || ||||| Sbjct 9605 TTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993442380920