Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq655 150 3e-31 seq779 93.3 7e-14 seq1 91.5 2e-13 >seq655 Length=33610 Score = 150 bits (166), Expect = 3e-31 Identities = 177/236 (75%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 203827 TCGAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAG 203886 |||| ||| || | |||| || ||||||| | || | || ||| | ||| ||| Sbjct 28786 TCGAGCCTCCG-CGTGTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAG 28844 Query 203887 ATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT 203946 |||||||||||||||||| || ||||||| ||| ||||| | ||||||| | ||| Sbjct 28845 ATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAG--- 28901 Query 203947 GCTC----ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAG 204002 || | | ||||| ||||| |||| ||||| || |||||||||||||||||| | | Sbjct 28902 GCGCGAATAGGTTGGC-TCGGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACG 28960 Query 204003 GCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTC 204058 || | || ||||| ||||| | ||| ||| ||||||||| ||||||||||||||| Sbjct 28961 GCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATCTCCCACACCGTC 29016 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||| ||||||| ||| | | ||| | ||||| ||||| ||||| | Sbjct 29760 CTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGT 29819 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTG 204996 ||| ||||| || | |||||||||||| ||| |||| ||||| |||| ||||| Sbjct 29820 CTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTG 29873 >seq779 Length=31144 Score = 93.3 bits (102), Expect = 7e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 116104 TTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGC 116163 ||||||| | |||| ||||| ||| | ||||| || || ||| ||||| |||| || Sbjct 15936 TTTACCAGCGGTCTGGGGACATCGGGCTTGGCGTTCCGTTCAACATTGCGTCCTACTCGA 15995 Query 116164 TACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTA 116223 | ||||| | ||| | || || || | | ||||||| ||| || || | |||| || Sbjct 15996 TCCTGACGTACATTGTCGCGCACCTGACTGGCCTGGAAACCGGGGAGTTTGTTCACTTTA 16055 Query 116224 TTGGGGACGCGCACATCTACACCAACCATGT 116254 | || ||| |||||||||||||| ||||||| Sbjct 16056 TCGGCGACACGCACATCTACACCGACCATGT 16086 >seq1 Length=85208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| |||||||||||||||| ||||| |||||||||||| ||| | |||||| || | Sbjct 27385 CAGCAGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAA 27444 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | || || |||| | || ||| || ||||| || || || ||||| || || Sbjct 27445 GGTCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGA 27504 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCC 160073 || ||||||||||| || || || | || || |||| Sbjct 27505 GAAGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCC 27542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795138034587120