Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq655 150 3e-31
seq779 93.3 7e-14
seq1 91.5 2e-13
>seq655
Length=33610
Score = 150 bits (166), Expect = 3e-31
Identities = 177/236 (75%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 203827 TCGAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAG 203886
|||| ||| || | |||| || ||||||| | || | || ||| | ||| |||
Sbjct 28786 TCGAGCCTCCG-CGTGTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAG 28844
Query 203887 ATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT 203946
|||||||||||||||||| || ||||||| ||| ||||| | ||||||| | |||
Sbjct 28845 ATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAG--- 28901
Query 203947 GCTC----ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAG 204002
|| | | ||||| ||||| |||| ||||| || |||||||||||||||||| | |
Sbjct 28902 GCGCGAATAGGTTGGC-TCGGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACG 28960
Query 204003 GCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTC 204058
|| | || ||||| ||||| | ||| ||| ||||||||| |||||||||||||||
Sbjct 28961 GCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATCTCCCACACCGTC 29016
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| |||||||| ||||||| ||| | | ||| | ||||| ||||| ||||| |
Sbjct 29760 CTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGT 29819
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTG 204996
||| ||||| || | |||||||||||| ||| |||| ||||| |||| |||||
Sbjct 29820 CTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTG 29873
>seq779
Length=31144
Score = 93.3 bits (102), Expect = 7e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 116104 TTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGC 116163
||||||| | |||| ||||| ||| | ||||| || || ||| ||||| |||| ||
Sbjct 15936 TTTACCAGCGGTCTGGGGACATCGGGCTTGGCGTTCCGTTCAACATTGCGTCCTACTCGA 15995
Query 116164 TACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTA 116223
| ||||| | ||| | || || || | | ||||||| ||| || || | |||| ||
Sbjct 15996 TCCTGACGTACATTGTCGCGCACCTGACTGGCCTGGAAACCGGGGAGTTTGTTCACTTTA 16055
Query 116224 TTGGGGACGCGCACATCTACACCAACCATGT 116254
| || ||| |||||||||||||| |||||||
Sbjct 16056 TCGGCGACACGCACATCTACACCGACCATGT 16086
>seq1
Length=85208
Score = 91.5 bits (100), Expect = 2e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| |||||||||||||||| ||||| |||||||||||| ||| | |||||| || |
Sbjct 27385 CAGCAGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAA 27444
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| | || || |||| | || ||| || ||||| || || || ||||| || ||
Sbjct 27445 GGTCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGA 27504
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCC 160073
|| ||||||||||| || || || | || || ||||
Sbjct 27505 GAAGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCC 27542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795138034587120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |