Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 145 2e-29
seq1 125 2e-23
seq944 111 4e-19
>seq1207
Length=23098
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| ||||||| ||||| ||||| ||||| ||||| |||| ||||||||| | | ||
Sbjct 18536 CGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTT 18595
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| || || |||||||||||||| ||||| || || |||||||||||||| ||||||
Sbjct 18596 CTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCT 18655
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| || ||| ||| ||||| |||| | || | | || || || | |
Sbjct 18656 TCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGC 18715
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || |||||||| || ||
Sbjct 18716 GTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTG 18753
>seq1
Length=85208
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| || || ||||||||||| |||| ||||||||| | || || ||||| ||
Sbjct 80281 AGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCC 80340
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| ||||| ||||| | ||||||||| || ||||| ||| |||
Sbjct 80341 TCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCC 80400
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| || ||| ||| || || |||| | || | || || || || | |||||||||
Sbjct 80401 TGGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTC 80460
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || || ||
Sbjct 80461 TTCCCTGTCAGTGTCTTGACGAAGATCTG 80489
>seq944
Length=26795
Score = 111 bits (122), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||| | ||| ||||||||||| ||||| |||||||| | ||||||||| | | ||
Sbjct 9416 TCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAGAGTGT 9475
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
||||| ||||| |||||||| || ||||| || || | |||||| || || |||||
Sbjct 9476 TCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCC 9535
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| || ||| ||| || || |||| || || | || || || || |
Sbjct 9536 CTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAG 9595
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || || || || || || || ||
Sbjct 9596 TGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTG 9634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178895513780709
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |