Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq944 131 2e-25 seq1207 113 5e-20 seq1 105 8e-18 >seq944 Length=26795 Score = 131 bits (144), Expect = 2e-25 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||| || || | ||| |||||||| || |||||||| || Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAG 9470 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| ||||||||||| || |||||||||| | |||||| || | ||| Sbjct 9471 AGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGG 9530 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTG--AGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | |||||||||| ||| || ||||| || |||| | | ||| | |||| Sbjct 9531 ATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCG--ATGGATTCGGATGCATCCA 9588 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 | || | ||||| |||||||| |||||||| || || ||||| |||||| |||| Sbjct 9589 CCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATTGTGCA 9643 >seq1207 Length=23098 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || | | |||| || |||||||| || ||||| Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | || |||||| || || ||||| | | Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGAC 18685 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| ||| || || || | |||||| || || || ||||| || || ||| Sbjct 18686 TCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACA 18745 Query 46583 AAGATTTGCATTTTGCACAAACAACAC 46609 ||||| ||||| | ||||||||||| Sbjct 18746 AAGATCTGCATGTGAAACAAACAACAC 18772 >seq1 Length=85208 Score = 105 bits (116), Expect = 8e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| ||||| ||||||||||| || || | |||| ||| Sbjct 80284 ACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCG 80343 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | | ||||||||| | || | | ||| |||||| | Sbjct 80344 AGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGG 80403 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| || | | | || ||| || || || || | ||||| || || Sbjct 80404 ATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTC 80463 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || ||||| || || || ||||| ||||||| Sbjct 80464 CCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226197916040