Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 228 8e-55 seq944 136 4e-27 seq1207 107 2e-18 >seq1 Length=85208 Score = 228 bits (252), Expect = 8e-55 Identities = 391/567 (69%), Gaps = 3/567 (1%) Strand=Plus/Plus Query 132888 CATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAA 132947 || || ||| |||||||||| |||| |||||||||| | || || ||||| ||| Sbjct 27385 CAGCAGGCACGCAAAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAA 27444 Query 132948 AGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA 133007 |||| || |||| ||||| || || || ||||| || || || || || |||||| Sbjct 27445 GGTCAGCCCAGGCAGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGA 27504 Query 133008 AAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTT 133067 ||||||| |||||||| || |||| || || || ||| || ||| || | || | Sbjct 27505 GAAGAAGATCCCCTCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCT 27564 Query 133068 GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGAT 133127 | |||||| | | || ||| |||||||| || |||||| |||| | |||||||| Sbjct 27565 GTCCTTGATCCACCTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGAT 27624 Query 133128 GGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGA 133187 || || || | | | ||||| | | | | ||| ||||| ||||| Sbjct 27625 CGCATTGAAAAGCCTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCT 27684 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 |||| || ||||| | |||||| || || || || |||||||| ||||||||||| Sbjct 27685 GTACACCTCGGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTC 27744 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | | ||| || || || ||| ||||||| ||| || || ||| || |||||||| Sbjct 27745 GGGGATCTGGACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCT 27804 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC 133367 || || |||||||| || || ||| | || || | ||||||||| ||| ||| Sbjct 27805 TGCTGCAAAAAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTC 27864 Query 133368 ---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 ||||||| | ||||| ||||||||| | |||||| | ||||| || |||||||| Sbjct 27865 CCTCCAGTCGGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTC 27924 Query 133425 GGCTTTTTTGTACATACTCCACATGTC 133451 || | |||||||| ||| ||||| Sbjct 27925 GGACTGCTTGTACATGTCCCAGATGTC 27951 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || ||||| || || || || || || || |||||| |||| ||||| | Sbjct 80494 AAATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAG 80435 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | || | |||||||| |||||||||||||| ||| | |||| Sbjct 80434 CCGAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACC 80375 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | ||||||| |||||| || ||||| || |||| | || || |||||||| Sbjct 80374 AGCAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACA 80315 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||||||||||| | || || ||| || | || || Sbjct 80314 ACATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGG 80266 >seq944 Length=26795 Score = 136 bits (150), Expect = 4e-27 Identities = 174/234 (74%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || |||||||| ||||| || |||||||| ||||| |||| || || || | Sbjct 9638 AATGCAGATCTTCGTAAAGACGCTGACAGGCAAAACAATCACACTCGAGGTGGATGCATC 9579 Query 38303 CGA---CAGCGTGCAAACGCT-TAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| || || || || | |||| |||||||| ||||| |||||||| |||||| Sbjct 9578 CGAATCCATCG-----ACTCTGTCAAGACAAAAATCCAGGACAAGGAGGGAAT-CCCGCC 9525 Query 38358 -GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || || ||| | || || | ||| || || ||||| || |||| | || ||| || Sbjct 9524 AGATCAGCAGAGACTGATATTCGCTGGGAAGCAGCTCGAAGACGGAAGAACACTCTCGGA 9465 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||||||| |||| || || | ||||||||| | |||||||| Sbjct 9464 CTACAACATACAAAAGGAATCGACACTCCACCTTGTGCTGCGTCTTAGAGGCGG 9411 >seq1207 Length=23098 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 |||||| | |||||||| ||||| ||| | ||||| ||||| || |||| ||| || || Sbjct 18673 AAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAGCAGCGACTGATTTTCGCAGGAAA 18614 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| |||| | | || ||| |||||||||||||| |||||| ||||||| || Sbjct 18613 GCAGCTGGAGGACGGGAGAACACTCTCGGACTACAACATCCAGAAGGAATCGACGCTCCA 18554 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || | || | ||||| Sbjct 18553 TCTTGTTTTGAGACTGCGTGGCGG 18530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162002519680