Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq732 325 5e-84 seq1550 86.0 8e-12 >seq732 Length=31501 Score = 325 bits (360), Expect = 5e-84 Identities = 762/1142 (67%), Gaps = 12/1142 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || ||||| | || ||||| || || |||| |||||||| || ||||| |||||||| Sbjct 7828 TCGCCCGTCAGTATCGCGGCCTGCACACTCGCGCCGTATGCAACAGCCTCGTCGGGGTTG 7887 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || ||||||| | || | || || |||||| Sbjct 7888 ATCGCCTTGCTCGGCTCCTTTCCGCCGAAGAAATCCGAAACGATCTTCTGGATCTTCGGG 7947 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || |||||||| || || || | || | || | ||| | || |||||| | | Sbjct 7948 ATCCGTGTCGACCCCCCAACAAGCACAACCTCGTACACGGAGGCCTTGTCGATCGCGGCG 8007 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC-GGAACAAGTCCATACACAGTTC 7248 || || || ||| |||| || | | | || |||| | ||| | || Sbjct 8008 TCGCGCAGAACTTTCTCGAGCGGCGCGAGTG-TCGACTGGAAGAGGTCGTAGTTGATCTC 8066 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| || || || || || |||||||| ||||| || | || || | | ||| || || Sbjct 8067 CTCGAACCGGGCCCGTGTGATGGATGTGTAGAAGTCGATCCCCTCAAACAGCGAGTCGAT 8126 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || || | | || | | ||| || | ||||||||| || || || || || || || Sbjct 8127 CTCGATCGAGGCCTGGGTGGACGACGAGAGCGTTCGCTTGGCCCGTTCGCAGGCGGTGCG 8186 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | | || ||||| ||||| |||| | ||| ||||| || || || ||||| Sbjct 8187 GAGCCTCCGGAGGGCCCGCGGCGACCCGGTCAGATCCTTCTTGCTCTTTCGCTTGAACTC 8246 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || || ||||| | || | ||||| || || || || | || || || || Sbjct 8247 CTCGGAAAAGTGCGCCACAAGCCGGTTGTCGAAGTCCTCTCCCCCGAGATGCGTGTCTCC 8306 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| || ||||| || | || || | || ||| || || || || Sbjct 8307 AGCGGTGGCCTTGACCTCGAAGATCCCCTCGTCGATTGCCAGCAGCGACACGTCGAAGGT 8366 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 || || || || || || ||||| ||||| || | | | ||| ||||| || Sbjct 8367 GCCCCCGCCGAGATCGAAGATGAGAACGTTGCGCTCCTTCAAGTGCTGCTTGTCGAGCCC 8426 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 |||||| || || || || || || || || || || || ||| | ||| | ||||| Sbjct 8427 GTACGCAATCGCGGCTGCAGTGGGCTCGTTGATGATCCGGAGAACCTCCAGCTCGGCAAT 8486 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 || |||| || |||||||| || || ||||| ||||| ||||||||||| || || || Sbjct 8487 CATTCCCGCGTCCTTCGTCGCCTGGCGCTGCGAGTCGTTGAAGTAGGCCGGCACGGTGAC 8546 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||||| | || || || |||| |||| || || | | ||||| || | || Sbjct 8547 AACCGCCTTGGTCACCGGCTGCCCGATGTACGTCTCTGCAACCTGCTTCATCTTCATCAG 8606 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 | ||||| || ||||| || |||| || ||||| || || ||||| ||||| || Sbjct 8607 GATCATCGCAGAGATCTCCTCCGCCGTGAAGCTCTTCGTCTCCCCCTTAAACTCAACCTC 8666 Query 7849 AAT-CATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 || || || || | | | || ||||| ||||||| | ||||| |||| Sbjct 8667 CATGCACGGCTTGTCGTTCTTCTC----AATCACCTTGAACGACCAGTGCTTCATGTCGT 8722 Query 7908 CTTGGACCTGTTGGTC-CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTG 7966 | || |||| | ||| | |||| | || || || ||||| ||||| || || ||| Sbjct 8723 CCTGCACCTCCTTGTCGCCGAAAC-GCCGCCCAATCAGCCGCTTCGCATCGAACACGGTG 8781 Query 7967 TTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTT 8026 || | ||||||||| | |||||||||||||| |||||||||||||| || | Sbjct 8782 TTGAGCGCGTTCATGGCGGCCTGGTTCTTCGCCGCCTCCCCGATAAGACGCTC---GCTG 8838 Query 8027 TCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCT 8086 ||||||||||| || ||||| || || || || || || || ||||||| || || || Sbjct 8839 TCCGTAAACGCAACATACGACGGCGTGGTCCGGTTTCCCTGCTCGTTCGTGATGATCTCG 8898 Query 8087 ACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATT 8146 || || ||||| |||||| ||||| ||||| || |||||||||| ||| || || | | Sbjct 8899 ACCCGCTCGTTCTGCCAGTACCCGACACACGAGTATGTTGTTCCTAGATCTATTCCAACT 8958 Query 8147 GC 8148 || Sbjct 8959 GC 8960 >seq1550 Length=17363 Score = 86.0 bits (94), Expect = 8e-12 Identities = 256/395 (65%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || |||||||| | || ||||| ||||| ||| | | |||| ||| |||| Sbjct 11855 TTCTACCAGGCATCAAGCTCGGAGCTGTACGGGAAAATCACAGAAAAAATCCAATCTGAA 11914 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || || || || || || || || || | || | || | | | ||| ||| | Sbjct 11915 ACAACCCCCTTCTATCCCCGCTCCCCGTACGCCGTCTCAAAGCTCTTCGCATACTGGATG 11974 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 | | || || ||||| ||||||| ||| |||| || || || | ||||||||| Sbjct 11975 GTAATCAACTACAGAGAGGCATACGGGATGCACGCATCAAACGGGATCCTCTTCAACCAC 12034 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 ||| ||| | |||| ||| || ||||| || || ||| | ||||| || Sbjct 12035 GAAAGCCCGCGGAGGGGAAGGCGCTTTGTCACACGGAAGATCACAGAGGCCGTCGCAAAA 12094 Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743 ||| || ||||| | || | || || || ||||| | || ||||| || ||| Sbjct 12095 ATCCACCTGGGAAAACAGAGCTGCCTCTATCTGGGAAACCTCAACGCAAAACGCGACTGG 12154 Query 22744 GGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAA 22803 || || ||| | || || || | | ||||||| || | ||| |||| | || || Sbjct 12155 GGACACGCAAGAGACTATGTCGAGGGAATGTGGATGATCCTCCAAAAAGAAACCCCAGAC 12214 Query 22804 GATTTTGTTATTGCAACAGGCGTAACAACAACCGT 22838 || ||||| | ||||||| |||||||||||| Sbjct 12215 GACTTTGTGCTCTCAACAGGGACAACAACAACCGT 12249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119089070680