Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq655 131 2e-25 >seq655 Length=33610 Score = 131 bits (144), Expect = 2e-25 Identities = 519/807 (64%), Gaps = 15/807 (2%) Strand=Plus/Plus Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | || || || |||| |||| | ||| || ||||||| | || |||| Sbjct 29756 TGTACTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGT 29815 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 | ||||| ||||||||| |||||||| | ||||| || | || ||||| |||| | Sbjct 29816 TTGTCTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCG 29875 Query 106626 ACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCT 106682 ||| || ||| ||||| | || ||| | | || || | | | || | || | Sbjct 29876 CGGTGACTATCTCCTGCCACAGCTTCTGCGCCGG---CATTGTCTTCTTTCCCAGCCCGT 29932 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 || ||||||| ||| || || || || ||||| ||| || ||| || || | Sbjct 29933 CCCGCTCGTACCGCTCGTACAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAG 29992 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || | || |||||||| || | ||| || | ||| || ||| ||| || | Sbjct 29993 GCGCATCGTTCGGACAGAACAGCGTCCAGCTCCCGTTGTTCTCCACGCGCCGCATAAACA 30052 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGG 106861 ||||||| |||||||| | | | || || | | | | || | || | | || || Sbjct 30053 GGTCTGGCATCCACAGCGCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGT 30112 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 | | | | | ||||| |||| | |||||| ||||| ||||| || |||| || Sbjct 30113 TCTTCTTG-AGCGAGAGGAAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCA 30171 Query 106922 ATAGATCCC----TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 | | ||| ||| | | || | || | |||| || || || || | ||| || Sbjct 30172 AACGCGCCCGGTCTTTTG-CTTCCTCCCTGGTCCGCATACCGTGCCGTTGCATCAAAGAC 30230 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 || ||||| |||| |||||| | ||| || ||||| ||||| ||| |||| | Sbjct 30231 ACGGAGCATCGGAACAATACCGTTTGAAACGCCGTTTGTTCCCCGGATAAGAGACCCGCT 30290 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | | ||||||| || ||| || || | | || || || |||| || Sbjct 30291 TGCCCGGATGTTGTGGATGTTCAGCCCGATGCCTGCGCCTGTCTGCGATATCAGCGCGCA 30350 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 || || || || ||||| || || || ||||| || | | | | ||||| Sbjct 30351 CTGTGTCAGTGTCTTGTAGATCCCCTTCATCGAGTCGTCGGCCATCGTCAGCACAAAGCA 30410 Query 107158 ACTGGACATCTGCGGTCTTGG-TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 107216 ||||| | ||| | | ||| | | || ||||| | || || ||||||||||| |||| Sbjct 30411 GCTGGAAAGCTG-GTTGTTGTCTTTGCCGGCATTCATCAGCGTCGGTGTTGCGTGGATGA 30469 Query 107217 ACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 | | | | ||||| | ||||||||||||| | |||||||| || ||||||| Sbjct 30470 AGTTCCGCCGAGACATGTGCTCGTATGTCTCCAGCGCCTTCTCAATGTCCTCGCCGTGGA 30529 Query 107277 TGCCGATGGCCACACGCATAAACATGT 107303 | | | || |||||||| | ||||| Sbjct 30530 TCTCAACTGCAACACGCATCAGCATGT 30556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968063789480