Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 136 9e-27
seq1 131 4e-25
seq944 123 6e-23
>seq1207
Length=23098
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||||||||| || || || || || || || || ||||| || | || ||||||
Sbjct 18539 AGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTC 18598
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || || |||||||| |||||||| || ||||| || ||||| || || || ||||||
Sbjct 18599 CCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCT 18658
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || |||||| ||||||| ||| || | || | || || ||||| ||
Sbjct 18659 TTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTG 18718
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||||||| |||| || || || || | |||||
Sbjct 18719 ATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq1
Length=85208
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| || || || ||||| || || || ||||| |||| || ||||| || || ||
Sbjct 80283 AACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTC 80342
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || ||||| || |||| || |||||||| || || || |||||||| ||
Sbjct 80343 GAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTG 80402
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|||||| |||||| ||| || | || | || || || ||||| | ||||||
Sbjct 80403 GATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTT 80462
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||||||| || || ||||| | |||||||
Sbjct 80463 CCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494
>seq944
Length=26795
Score = 123 bits (136), Expect = 6e-23
Identities = 161/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || |||||||| || || || || ||||| || ||||| || | || ||
Sbjct 9416 TCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAGAGTGT 9475
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
||| || |||||||||||||| || ||||| || |||| || || ||||| || || ||
Sbjct 9476 TCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCC 9535
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| ||||| || |||||| |||||| || |||| || || ||||| || ||
Sbjct 9536 CTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAG 9595
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || || ||||||| || |||||||| | ||||||
Sbjct 9596 TGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATT 9638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109457050292609
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |