Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1207 109 4e-19 seq944 102 5e-17 seq1 93.3 3e-14 >seq1207 Length=23098 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||||||| | || | || ||| ||||| ||||| |||||||| || ||| | Sbjct 18542 CTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCG 18601 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| ||||| || || || ||||| |||||||| | || | || || ||| Sbjct 18602 TCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTG 18661 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || || || |||||||| | ||||| || | | ||||| || | || || Sbjct 18662 TCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATT 18721 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || |||||||||||||||||||| Sbjct 18722 GTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 >seq944 Length=26795 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| |||||||| || ||| | | || || ||||| || || || || Sbjct 9446 TTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAA 9505 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGG 34908 ||| |||| ||||| ||| |||| | ||||||||||| || || ||| ||||| | Sbjct 9506 TATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTC-CTGGATTTTTGTCTTGACAG 9564 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | | || ||||| || || || |||| || || ||||| || || || ||||| | Sbjct 9565 AGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTA 9624 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 9625 CGAAGATCTGCAT 9637 >seq1 Length=85208 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || ||| | | || || ||||| ||||| || || Sbjct 80302 TCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAA 80361 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | ||||| ||||| || || ||||| || Sbjct 80362 ATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGAC 80421 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | ||||| || | | || || |||| ||| || || || || || || ||||| || Sbjct 80422 TCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACG 80481 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 80482 AAGATCTGCAT 80492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626767172856