Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 109 4e-19
seq944 102 5e-17
seq1 93.3 3e-14
>seq1207
Length=23098
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
|||||||| | || | || ||| ||||| ||||| |||||||| || ||| |
Sbjct 18542 CTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCG 18601
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| |||||||| ||||| || || || ||||| |||||||| | || | || || |||
Sbjct 18602 TCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTG 18661
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
|| || || |||||||| | ||||| || | | ||||| || | || ||
Sbjct 18662 TCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATT 18721
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || || ||||||||||||||||||||
Sbjct 18722 GTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
>seq944
Length=26795
Score = 102 bits (112), Expect = 5e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| || || ||||| |||||||| || ||| | | || || ||||| || || || ||
Sbjct 9446 TTCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAA 9505
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGG 34908
||| |||| ||||| ||| |||| | ||||||||||| || || ||| ||||| |
Sbjct 9506 TATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTC-CTGGATTTTTGTCTTGACAG 9564
Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
| | || ||||| || || || |||| || || ||||| || || || ||||| |
Sbjct 9565 AGTCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTA 9624
Query 34969 CAAAGATCTGCAT 34981
| |||||||||||
Sbjct 9625 CGAAGATCTGCAT 9637
>seq1
Length=85208
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || ||| | | || || ||||| ||||| || ||
Sbjct 80302 TCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAA 80361
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| |||| ||||||||| | || | ||||| ||||| || || ||||| ||
Sbjct 80362 ATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGAC 80421
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| ||||| || | | || || |||| ||| || || || || || || ||||| ||
Sbjct 80422 TCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACG 80481
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 80482 AAGATCTGCAT 80492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324626767172856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |