Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq779 178 1e-39 seq1675 91.5 1e-13 >seq779 Length=31144 Score = 178 bits (196), Expect = 1e-39 Identities = 323/469 (69%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| || |||||||| | ||| |||||||| || || || ||| Sbjct 16131 GGGAAAGGC-CTTGGCTCCCTTCTGCACTGCTCCTTCAGCGACAAAACATGGTCGGTGTA 16073 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 || ||| | ||| || | ||| |||||||| || | ||| || || || | ||| || Sbjct 16072 GATGTGCGTGTCGCCGATAAAGTGAACAAACTCCCCGGTTTCCAGGCCAGTCAGGTGCGC 16013 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | |||||||| |||| |||||| || ||||| || || || || ||||| ||||| Sbjct 16012 GACAATGTACGTCAGGATCGAGTAGGACGCAATGTTGAACGGAACGCCAAGCCCGATGTC 15953 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 ||| |||| |||||| ||| || |||| | |||| || |||||||| ||| Sbjct 15952 CCCAGACCGCTGGTAAAGCGCGCAGCTCAGCTTCCTGTCGGAGACATAAAACTGGAACAG 15893 Query 30006 GGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30063 || ||||||| |||||| |||| ||||| | | ||| ||||| || | || Sbjct 15892 CGTTGGGCACGGCGGAAGAACCATCAGAGGCGCTG--CAACGGGATTCCACGCACTGACA 15835 Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTG------ATGAGGTCCACGGCGTTTTGCAGC 30117 | || |||||||| | || |||||| | || ||| | | ||||||||| Sbjct 15834 ACCATCCGCCTGTCGT---GGATGTTCCCGCTTTTTATCGTGTCAATCACCTTTTGCAGC 15778 Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 ||||| ||||| ||| | |||||| | |||| ||||||| || || |||||| Sbjct 15777 TGATCGACCCCTTCCCCGGTGTAGTCGGTGTAGCAGTCCTTGTACTCGGCCCCAAAATGC 15718 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 30226 ||||||||||| |||||||| || || || || ||||| ||||||| || Sbjct 15717 CTCCACTGGAAGCCGTACACAGGCCCGAGATCCCCCTCGTCCCTGTCCT 15669 >seq1675 Length=15499 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/155 (76%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 52044 CACCCAGAGATGGGCGACAAGTTTGCGT-CGTTCACGGCGCAAAAGGGGACGTGCGGAGC 52102 || || ||||| || ||||||||| | | ||||| ||| |||||| ||||| Sbjct 10998 CAGCCCGAGATTGGGGACAAGTTTTCCAGCAGGCACGG-GCAGAAGGGGGTCTGCGGGAT 10940 Query 52103 CGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGA-CGGGGTGGTGCCCG-ACCTCATC 52160 ||||||| | |||||||||||||| || ||| || |||||| |||||| || | ||| Sbjct 10939 CGTCCTGCCACAGGAGGACATGCCGTTT-ACAGAGAGCGGGGTC-TGCCCGGACATAATC 10882 Query 52161 ATCAACCCCCACGCCTTTCCATCCAGGATGACCGT 52195 || ||||| |||| ||| || |||||||||||||| Sbjct 10881 ATGAACCCGCACGGCTTCCCGTCCAGGATGACCGT 10847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608999493371