Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq944 109 4e-19
seq1207 95.1 9e-15
>seq944
Length=26795
Score = 109 bits (120), Expect = 4e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| || || |||| ||| | || || || || ||||| || ||||| || ||
Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGTCCGAG 9470
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| ||| |||| || | |||||| || || |||||||||| ||| ||||| | ||
Sbjct 9471 AGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGG 9530
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| || |||||| || ||||| | | || || || || |||||
Sbjct 9531 ATTCCCTCCTTGTC-CTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCAC 9589
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||| | || || ||||| || |||| || ||||| || |||||||| |||
Sbjct 9590 CTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATTGTG 9641
>seq1207
Length=23098
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | || | ||| || | ||| ||||| || || || || ||||| || ||
Sbjct 18530 CCGCCACGCAGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 18589
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| ||| |||| |||| |||||| || || || ||||||||||| || |||| |||
Sbjct 18590 AGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 18649
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || || ||||| || ||| || || || | | ||||| | || || |||
Sbjct 18650 ATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACC 18709
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||| || || ||||| |||| || || ||||| ||||||||
Sbjct 18710 TCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380929582096821
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |