Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1 203 6e-47
seq655 118 2e-21
>seq1
Length=85208
Score = 203 bits (224), Expect = 6e-47
Identities = 569/862 (66%), Gaps = 30/862 (3%)
Strand=Plus/Plus
Query 47841 GGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCA 47900
|||| ||| ||| | ||||| ||||||| || ||||| || ||| ||||| ||||
Sbjct 27105 GGTACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGCGAAATGTTTTCCA 27164
Query 47901 TGAAGAGGAAGGGGTTG--GGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
| ||| ||| ||||| | ||| |||| || | ||| | | || || ||
Sbjct 27165 TAAAGTCGAACGGGTTCTCGCTGTTGTATA-ACTTCTCGCAGTCG-AGCTCGGAGAGAAG 27222
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|| || ||||| ||||||||||| | ||||||| || ||||||| || || || ||
Sbjct 27223 ATGGTCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTCATCCCGATCAGCGA 27282
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||| | |||| |||||| | |||||||| || || || | | || |
Sbjct 27283 GACGGGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGCCTCGCGGATGAT--G 27340
Query 48079 CTTA--ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
||| | | || || || ||||| | |||| |||| |||| ||| |||
Sbjct 27341 CTTTGGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCC--GCATC-AGCAGGCACGCA 27397
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||||| || |||||||||||||| ||| |||| |||||| || ||||||
Sbjct 27398 AAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGCCCAGGC 27457
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
| | |||| || || |||||||| || || || || | ||| ||||||||||| |||
Sbjct 27458 AGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAGATCCCC 27517
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316
|| ||||| |||| || |||| | | ||| | | | | |||| ||||||
Sbjct 27518 TCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCCTTGATCCAC 27577
Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376
| || |||||| ||||||| ||||| | | || | || || || || ||| |||
Sbjct 27578 CTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTGAAAAGC 27637
Query 48377 TTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGC-AGCTTTGCGTACATCTC 48432
| | ||| | | |||| | | || || | ||||| |||| ||||| |||
Sbjct 27638 CTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCT----GTACACCTC 27693
Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492
||||| | ||||| || |||||||||||||| || || ||||| | |||
Sbjct 27694 GGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGATCTG 27753
Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552
|| || | |||| | ||| | ||| ||||| ||||||||| || || |||||
Sbjct 27754 GACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGCAAA 27813
Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCC 48609
|||||||| ||||| || || || | ||||||| ||| || | ||||| |
Sbjct 27814 AAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCTCCAGTC 27873
Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC----GAGTGCTT 48665
| ||| | |||||| | || || | |||||||| ||||| || |||
Sbjct 27874 GGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGACTGC-- 27931
Query 48666 TTTTGTACATGCCCCATATGTC 48687
||||||||| |||| |||||
Sbjct 27932 --TTGTACATGTCCCAGATGTC 27951
>seq655
Length=33610
Score = 118 bits (130), Expect = 2e-21
Identities = 509/795 (64%), Gaps = 30/795 (4%)
Strand=Plus/Plus
Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254
|||||||| || |||| ||||| |||| ||| | || || |||||| || |||||
Sbjct 29428 AGCTCGCACGAGGCCTCGAGGGCTGCGTGGTACACCGTCTCGAATATCCGCCGGTTGATG 29487
Query 213255 TTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314
| |||| ||| ||| || | | | | ||| ||||| || || |||
Sbjct 29488 GCGCGGCCCTCCTCGGAGTCGAACGGGACCTTTAGCTCACAGAAAACATCCGCAAGTCCC 29547
Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAG 213371
|| || |||| ||| | || | ||||| |||||| || ||| | || ||| |
Sbjct 29548 TGCACACCGAGGCCAAGCGGGCGGTGTCGCAGGTTCGAGGTCTTTGC---CTTCTCAAGC 29604
Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431
||||| |||| |||||||||||||| ||||| || || || | || || || | |
Sbjct 29605 GGGTACCGGTTGTTGTCGATGATCTTGTCCAGGTTCCGTGTTGCGATCTTTGTCACCTTG 29664
Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491
|| | ||| | || | | ||||||| | |||| ||||| | |
Sbjct 29665 TGGAGAAGCGCGTAGTCGAGCTTG------CCGTCCTCGATAAACGACGGCAGCCCAAGA 29718
Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551
| || ||||| || | | ||||| | ||||||| | |||||| ||||||
Sbjct 29719 GACCCGAGATTGCAGACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCAC 29778
Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCC 213611
|||||||| | ||| || ||||||| ||||||||||| |||| |||| | |||
Sbjct 29779 AGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCC 29838
Query 213612 TTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGG 213671
||||| | ||||| ||| |||||||| | ||| | | ||||| ||| ||
Sbjct 29839 TTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGC 29898
Query 213672 TAC----CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTA 213727
| | | ||| ||| | | || |||| ||| | ||||||| | |||||
Sbjct 29899 TTCTGCGCCGGCATTGTCTTCTTTCC---CAGC-CCGTCC---CGCTCGTACCGCTCGTA 29951
Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACA 213786
||| | | ||| || | ||||| | | ||| || || || | | ||||| |
Sbjct 29952 CAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAGGCGCATCGTTC-GGACAGA 30010
Query 213787 TGAGGCTCCAG-TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845
|| ||||| |||| | |||| || | | |||| |||||||| || | |||||||
Sbjct 30011 ACAGCGTCCAGCTCCCGTTGTTCTC-CACGCGCCGCATAAACAGGTCTGGCATCCACAGC 30069
Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905
|| | ||||||||| | | ||| ||| || | ||| || || ||
Sbjct 30070 GCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGAGAGG 30129
Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965
||||| | | ||||| ||||||||||| | |||||| ||||| |||||||| || |||
Sbjct 30130 AAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCAAACGCGCCCGGTCTTTTG 30189
Query 213966 ---CCGCCCTGGTCC 213977
|| |||||||||
Sbjct 30190 CTTCCTCCCTGGTCC 30204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931512690535680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |