Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 203 6e-47 seq655 118 2e-21 >seq1 Length=85208 Score = 203 bits (224), Expect = 6e-47 Identities = 569/862 (66%), Gaps = 30/862 (3%) Strand=Plus/Plus Query 47841 GGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCA 47900 |||| ||| ||| | ||||| ||||||| || ||||| || ||| ||||| |||| Sbjct 27105 GGTACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGCGAAATGTTTTCCA 27164 Query 47901 TGAAGAGGAAGGGGTTG--GGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 | ||| ||| ||||| | ||| |||| || | ||| | | || || || Sbjct 27165 TAAAGTCGAACGGGTTCTCGCTGTTGTATA-ACTTCTCGCAGTCG-AGCTCGGAGAGAAG 27222 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 || || ||||| ||||||||||| | ||||||| || ||||||| || || || || Sbjct 27223 ATGGTCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTCATCCCGATCAGCGA 27282 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| | |||| |||||| | |||||||| || || || | | || | Sbjct 27283 GACGGGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGCCTCGCGGATGAT--G 27340 Query 48079 CTTA--ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| | | || || || ||||| | |||| |||| |||| ||| ||| Sbjct 27341 CTTTGGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCC--GCATC-AGCAGGCACGCA 27397 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| || |||||||||||||| ||| |||| |||||| || |||||| Sbjct 27398 AAGTCGCGGTGCACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGCCCAGGC 27457 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 | | |||| || || |||||||| || || || || | ||| ||||||||||| ||| Sbjct 27458 AGCAGGCCCCGCTTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAGATCCCC 27517 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || ||||| |||| || |||| | | ||| | | | | |||| |||||| Sbjct 27518 TCGACTGCTGCGATTGCAACAAGCCGCACGGGGAAGGTCGTCTCCCTGTCCTTGATCCAC 27577 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 | || |||||| ||||||| ||||| | | || | || || || || ||| ||| Sbjct 27578 CTGATCGTCCAGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTGAAAAGC 27637 Query 48377 TTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGC-AGCTTTGCGTACATCTC 48432 | | ||| | | |||| | | || || | ||||| |||| ||||| ||| Sbjct 27638 CTGTCCTTCTCGGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCT----GTACACCTC 27693 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || |||||||||||||| || || ||||| | ||| Sbjct 27694 GGAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGATCTG 27753 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | |||| | ||| | ||| ||||| ||||||||| || || ||||| Sbjct 27754 GACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGCAAA 27813 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCC 48609 |||||||| ||||| || || || | ||||||| ||| || | ||||| | Sbjct 27814 AAAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCTCCAGTC 27873 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC----GAGTGCTT 48665 | ||| | |||||| | || || | |||||||| ||||| || ||| Sbjct 27874 GGCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGACTGC-- 27931 Query 48666 TTTTGTACATGCCCCATATGTC 48687 ||||||||| |||| ||||| Sbjct 27932 --TTGTACATGTCCCAGATGTC 27951 >seq655 Length=33610 Score = 118 bits (130), Expect = 2e-21 Identities = 509/795 (64%), Gaps = 30/795 (4%) Strand=Plus/Plus Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254 |||||||| || |||| ||||| |||| ||| | || || |||||| || ||||| Sbjct 29428 AGCTCGCACGAGGCCTCGAGGGCTGCGTGGTACACCGTCTCGAATATCCGCCGGTTGATG 29487 Query 213255 TTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 | |||| ||| ||| || | | | | ||| ||||| || || ||| Sbjct 29488 GCGCGGCCCTCCTCGGAGTCGAACGGGACCTTTAGCTCACAGAAAACATCCGCAAGTCCC 29547 Query 213315 TGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAG 213371 || || |||| ||| | || | ||||| |||||| || ||| | || ||| | Sbjct 29548 TGCACACCGAGGCCAAGCGGGCGGTGTCGCAGGTTCGAGGTCTTTGC---CTTCTCAAGC 29604 Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| |||| |||||||||||||| ||||| || || || | || || || | | Sbjct 29605 GGGTACCGGTTGTTGTCGATGATCTTGTCCAGGTTCCGTGTTGCGATCTTTGTCACCTTG 29664 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATG 213491 || | ||| | || | | ||||||| | |||| ||||| | | Sbjct 29665 TGGAGAAGCGCGTAGTCGAGCTTG------CCGTCCTCGATAAACGACGGCAGCCCAAGA 29718 Query 213492 CTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCAC 213551 | || ||||| || | | ||||| | ||||||| | |||||| |||||| Sbjct 29719 GACCCGAGATTGCAGACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCAC 29778 Query 213552 AGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCC 213611 |||||||| | ||| || ||||||| ||||||||||| |||| |||| | ||| Sbjct 29779 AGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCC 29838 Query 213612 TTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGG 213671 ||||| | ||||| ||| |||||||| | ||| | | ||||| ||| || Sbjct 29839 TTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGC 29898 Query 213672 TAC----CTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTA 213727 | | | ||| ||| | | || |||| ||| | ||||||| | ||||| Sbjct 29899 TTCTGCGCCGGCATTGTCTTCTTTCC---CAGC-CCGTCC---CGCTCGTACCGCTCGTA 29951 Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACA 213786 ||| | | ||| || | ||||| | | ||| || || || | | ||||| | Sbjct 29952 CAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAGGCGCATCGTTC-GGACAGA 30010 Query 213787 TGAGGCTCCAG-TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 || ||||| |||| | |||| || | | |||| |||||||| || | ||||||| Sbjct 30011 ACAGCGTCCAGCTCCCGTTGTTCTC-CACGCGCCGCATAAACAGGTCTGGCATCCACAGC 30069 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 || | ||||||||| | | ||| ||| || | ||| || || || Sbjct 30070 GCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGAGAGG 30129 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG 213965 ||||| | | ||||| ||||||||||| | |||||| ||||| |||||||| || ||| Sbjct 30130 AAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCAAACGCGCCCGGTCTTTTG 30189 Query 213966 ---CCGCCCTGGTCC 213977 || ||||||||| Sbjct 30190 CTTCCTCCCTGGTCC 30204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931512690535680