Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 228 2e-54 >seq1 Length=85208 Score = 228 bits (252), Expect = 2e-54 Identities = 558/842 (66%), Gaps = 22/842 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| ||||||||| || | | || |||||| || || ||||| || Sbjct 27951 GACATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGGAGATCGAC 27892 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTC 25590 ||| || |||||||| || |||| | || || | |||| || ||||| Sbjct 27891 CTGTCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCGACAACGAAAGACACTTTCTG 27832 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | | || | || || |||||||| || || ||||| ||||| ||| |||| Sbjct 27831 TCGCATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAGTCCTGGAGAACCTGATCGAG 27772 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | ||| || ||| | ||||| |||||| ||||| |||||||| Sbjct 27771 CGGTTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCCAGATAATG 27712 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT-CTGATG---ACGTACATTACAGA 25766 ||||| || | ||||| |||||||| ||||| || || |||||||| || Sbjct 27711 ATCGAGAACATCCACTCCGAGGTGTAC----AGCTTGCTCATTGACACGTACATCGAGGA 27656 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA-TACCCAGCATCAAGAGGA 25825 | |||||||| || |||| || ||| ||||| ||| | || | ||||| || Sbjct 27655 CACCGCCGAGAAGGACAGGCTTTTCAATGCGATCGAA-ACACTTCCGTACGTCAAGGAGA 27597 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTG 25884 |||| ||| | || | ||||||||| | ||| | | | || || || |||||| Sbjct 27596 AGGCCGACTGGACGATCAGGTGGATCAAG-GACAGGGAGACGACCTTCCCCGTGCGGCTT 27538 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || | || || || ||||| ||||| ||| || ||||||| || ||||||||| Sbjct 27537 GTTGCAATCGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCGATCTTCTGG 27478 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 || ||| || ||| |||| |||||| ||| || |||||||| |||||| ||||| Sbjct 27477 CTGAAGAAGCGGGGCCTGCTGCCTGGGCTGACCTTCTCGAACGAGCTGATCAGCCGGGAC 27418 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 ||||| | ||| | || ||||| |||||||| | | | ||| | |||| || Sbjct 27417 GAGGGAGTGCACCGCGACTTTGCGTGCCTGCT---GATGCGGCACATCAAGAACAAGCCG 27361 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || || ||| | || | || |||||| |||||||| ||||| ||| | |||| Sbjct 27360 TCGCAGGAGGTCATCCAAAGCATCATCCGCGAGGCTGTTGAGATAGAGCACCGCTTTCTC 27301 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | || |||||||||| |||||| |||| ||||| Sbjct 27300 GGCGAGGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAAGCTCATGTGCCAGTACATC 27241 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC 26242 |||||||| ||||||||||| || | | |||| |||| || ||| | |||| | Sbjct 27240 GAGTATGTCGCCGACCATCTTCTCTCCGAGCT-CGACT-GCGAGAAGTTATACAACAGCG 27183 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 |||||||||||||||||||||||||| ||| || ||||| |||||||||| || | Sbjct 27182 AGAACCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAAAACCAACTTCTACGAGA 27123 Query 26303 AG 26304 || Sbjct 27122 AG 27121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928824748562880