Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq655 107 2e-18 seq1550 100 3e-16 >seq655 Length=33610 Score = 107 bits (118), Expect = 2e-18 Identities = 517/814 (64%), Gaps = 15/814 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || ||| | | |||||||| || |||||||| | Sbjct 30563 CCGCAGCACATGCTGATGCGTGTTGCAGTTGAGATCCACGGCGAGGACATTGAGAAGGCG 30504 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||||||||||| | ||||| | | | ||||| ||||||||||| || || | Sbjct 30503 CTGGAGACATACGAGCACATGTCTCGGCGGAACTTCATCCACGCAACACCGACGCTGATG 30444 Query 75332 AATGCTGGTACA-CCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||| || | | ||| | | ||| | ||||| ||||| | | | | || || Sbjct 30443 AATGCCGGCAAAGACAACAAC-CAGCTTTCCAGCTGCTTTGTGCTGACGATGGCCGACGA 30385 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || || || ||||| || || || |||| |||| || || || | | Sbjct 30384 CTCGATGAAGGGGATCTACAAGACACTGACACAGTGCGCGCTGATATCGCAGACAGGCGC 30325 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || || ||| || ||||||| | | | || | |||| ||| ||||| ||||| Sbjct 30324 AGGCATCGGGCTGAACATCCACAACATCCGGGCAAGCGGGTCTCTTATCCGGGGAACAAA 30265 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || ||| | |||||| |||| ||||| || || ||| | || || || || |||| Sbjct 30264 CGGCGTTTCAAACGGTATTGTTCCGATGCTCCGTGTCTTTGATGCAACGGCACGGTATGC 30205 Query 75571 AAATCAAGCGGGGCGTCGCAA------GGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 | || ||| | |||| ||| | | ||| ||||| | || || ||||| Sbjct 30204 GGACCA---GGGAGGAAGCAAAAGACCGGGCGCGTTTGCGATCTACCTCGAGCCGTGGCA 30148 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||| ||| | |||| ||||| | | | | | || || | | || | || | | Sbjct 30147 TGCGGATGTGCTGGACTTCCTCTCGCT-CAAGAAGAACACGGGCAAGGAGGAGTTCCGCG 30089 Query 75685 TA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | | || || | | | |||||||| |||||||| || ||| ||| || ||| | Sbjct 30088 CACGGGACCTGTCCTATGCGCTGTGGATGCCAGACCTGTTTATGCGGCGCGTGGAGAACA 30029 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 || ||| | || |||||||| || | || || || || ||| || ||| | Sbjct 30028 ACGGGAGCTGGACGCTGTTCTGTCCGAACGATGCGCCTGGGCTGAGCGAGACGTGGGGAG 29969 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863 |||| || || || || ||| ||| || ||| || | || ||| | | Sbjct 29968 AGGACTTCGAGGCGCTGTACGAGCGGTACGAGCGGGACGGGCTGGGAAAGAAGACAATGC 29909 Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 | | ||| || | | ||| ||| || ||| | |||| ||||| |||| || || Sbjct 29908 C-GGCGCAGAAGCTGTGGCAGGAGATAGTCACCGCGCAGATCGAGACCGGAAACCCGTAC 29850 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 || | |||||||| || || ||| |||| ||||| || | |||| ||||||||| Sbjct 29849 ATCATGTACAAGGACGCGTGCAACCGAAAGACAAACCACCAGCACCTGGGGACAATCAAG 29790 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 | || || |||||||| || | ||||||| Sbjct 29789 GGGAGCAACCTGTGCACGGAGATCGTCGAGTACA 29756 >seq1550 Length=17363 Score = 100 bits (110), Expect = 3e-16 Identities = 237/354 (67%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677 ||||| ||| || || | |||||| | || |||||||| | || || |||||||| | Sbjct 12205 TTCTTTTTGGAGGATCATCCACATTCCCTCGACATAGTCTCTTGCGTGTCCCCAGTCGCG 12146 Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACA-----ATTTGT 177732 ||||||||||| || || | ||| | |||| | |||| || |||| | Sbjct 12145 TTTTGCGTTGAGGTTTCCCAGATAGAGGCAG-CTCTGT----TTTCCCAGGTGGATTTTT 12091 Query 177733 TTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCT-CGGTGATTCGTG 177791 |||| | || || |||||| |||||||||| || | | | || ||| |||||| Sbjct 12090 GCGACGGCCTCTGTGATCTTCCGTGTGACAAAG-CGCCTTCCCCTCCGCGGGCTTTCGTG 12032 Query 177792 GTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAG 177851 |||||||||||| ||| | || | ||| || || | |||| ||| || | || | Sbjct 12031 GTTGAAGAGGATCCCGTTTGATGCGTGCATCCCGTATGCCTCTCTGTAGTTGATTACCAT 11972 Query 177852 CCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 ||||| ||| | || |||||| | || ||| || || |||||||| || || Sbjct 11971 CCAGTATGCGAAGAGCTTTGAGACGGCGTACGGGGAGCGGGGATAGAAGGGGGTTGTTTC 11912 Query 177912 AGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || ||| ||||| || ||| || ||| |||||| |||| || ||||| Sbjct 11911 AGATTGGATTTTTTCTGTGATTTTCCCGTACAGCTCCGAGCTTGATGCCTGGTA 11858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556721553760