Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq655 107 2e-18
seq1550 100 3e-16
>seq655
Length=33610
Score = 107 bits (118), Expect = 2e-18
Identities = 517/814 (64%), Gaps = 15/814 (2%)
Strand=Plus/Minus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| | ||||| || ||| | | |||||||| || |||||||| |
Sbjct 30563 CCGCAGCACATGCTGATGCGTGTTGCAGTTGAGATCCACGGCGAGGACATTGAGAAGGCG 30504
Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331
||||||||||||| | ||||| | | | ||||| ||||||||||| || || |
Sbjct 30503 CTGGAGACATACGAGCACATGTCTCGGCGGAACTTCATCCACGCAACACCGACGCTGATG 30444
Query 75332 AATGCTGGTACA-CCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
||||| || | | ||| | | ||| | ||||| ||||| | | | | || ||
Sbjct 30443 AATGCCGGCAAAGACAACAAC-CAGCTTTCCAGCTGCTTTGTGCTGACGATGGCCGACGA 30385
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450
||| || || || ||||| || || || |||| |||| || || || | |
Sbjct 30384 CTCGATGAAGGGGATCTACAAGACACTGACACAGTGCGCGCTGATATCGCAGACAGGCGC 30325
Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510
|| || ||| || ||||||| | | | || | |||| ||| ||||| |||||
Sbjct 30324 AGGCATCGGGCTGAACATCCACAACATCCGGGCAAGCGGGTCTCTTATCCGGGGAACAAA 30265
Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570
|| ||| | |||||| |||| ||||| || || ||| | || || || || ||||
Sbjct 30264 CGGCGTTTCAAACGGTATTGTTCCGATGCTCCGTGTCTTTGATGCAACGGCACGGTATGC 30205
Query 75571 AAATCAAGCGGGGCGTCGCAA------GGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624
| || ||| | |||| ||| | | ||| ||||| | || || |||||
Sbjct 30204 GGACCA---GGGAGGAAGCAAAAGACCGGGCGCGTTTGCGATCTACCTCGAGCCGTGGCA 30148
Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684
||| ||| | |||| ||||| | | | | | || || | | || | || | |
Sbjct 30147 TGCGGATGTGCTGGACTTCCTCTCGCT-CAAGAAGAACACGGGCAAGGAGGAGTTCCGCG 30089
Query 75685 TA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743
| | || || | | | |||||||| |||||||| || ||| ||| || ||| |
Sbjct 30088 CACGGGACCTGTCCTATGCGCTGTGGATGCCAGACCTGTTTATGCGGCGCGTGGAGAACA 30029
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803
|| ||| | || |||||||| || | || || || || ||| || ||| |
Sbjct 30028 ACGGGAGCTGGACGCTGTTCTGTCCGAACGATGCGCCTGGGCTGAGCGAGACGTGGGGAG 29969
Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTAC 75863
|||| || || || || ||| ||| || ||| || | || ||| | |
Sbjct 29968 AGGACTTCGAGGCGCTGTACGAGCGGTACGAGCGGGACGGGCTGGGAAAGAAGACAATGC 29909
Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922
| | ||| || | | ||| ||| || ||| | |||| ||||| |||| || ||
Sbjct 29908 C-GGCGCAGAAGCTGTGGCAGGAGATAGTCACCGCGCAGATCGAGACCGGAAACCCGTAC 29850
Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982
|| | |||||||| || || ||| |||| ||||| || | |||| |||||||||
Sbjct 29849 ATCATGTACAAGGACGCGTGCAACCGAAAGACAAACCACCAGCACCTGGGGACAATCAAG 29790
Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016
| || || |||||||| || | |||||||
Sbjct 29789 GGGAGCAACCTGTGCACGGAGATCGTCGAGTACA 29756
>seq1550
Length=17363
Score = 100 bits (110), Expect = 3e-16
Identities = 237/354 (67%), Gaps = 12/354 (3%)
Strand=Plus/Minus
Query 177618 TTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCT 177677
||||| ||| || || | |||||| | || |||||||| | || || |||||||| |
Sbjct 12205 TTCTTTTTGGAGGATCATCCACATTCCCTCGACATAGTCTCTTGCGTGTCCCCAGTCGCG 12146
Query 177678 GGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACA-----ATTTGT 177732
||||||||||| || || | ||| | |||| | |||| || |||| |
Sbjct 12145 TTTTGCGTTGAGGTTTCCCAGATAGAGGCAG-CTCTGT----TTTCCCAGGTGGATTTTT 12091
Query 177733 TTGACGCCATCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCT-CGGTGATTCGTG 177791
|||| | || || |||||| |||||||||| || | | | || ||| ||||||
Sbjct 12090 GCGACGGCCTCTGTGATCTTCCGTGTGACAAAG-CGCCTTCCCCTCCGCGGGCTTTCGTG 12032
Query 177792 GTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAG 177851
|||||||||||| ||| | || | ||| || || | |||| ||| || | || |
Sbjct 12031 GTTGAAGAGGATCCCGTTTGATGCGTGCATCCCGTATGCCTCTCTGTAGTTGATTACCAT 11972
Query 177852 CCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911
||||| ||| | || |||||| | || ||| || || |||||||| || ||
Sbjct 11971 CCAGTATGCGAAGAGCTTTGAGACGGCGTACGGGGAGCGGGGATAGAAGGGGGTTGTTTC 11912
Query 177912 AGTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965
|| ||| ||||| || ||| || ||| |||||| |||| || |||||
Sbjct 11911 AGATTGGATTTTTTCTGTGATTTTCCCGTACAGCTCCGAGCTTGATGCCTGGTA 11858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596556721553760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |