Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq732 358 9e-94 seq1207 134 2e-26 seq1 125 9e-24 >seq732 Length=31501 Score = 358 bits (396), Expect = 9e-94 Identities = 1036/1581 (66%), Gaps = 19/1581 (1%) Strand=Plus/Minus Query 195303 TTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTA-TGGCAAAATGATCGTGTA 195361 |||| || ||| ||||||| || ||||| ||||| || ||| ||||| || || || || Sbjct 8956 TTGGAATAGATCTAGGAACAACATACTCGTGTGTCGG-GTACTGGCAGAACGAGCGGGTC 8898 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| ||| |||| || || |||||||| || || || ||||| ||||| ||||| || Sbjct 8897 GAGATCATCACGAACGAGCAGGGAAACCGGACCACGCCGTCGTATGTTGCGTTTACGGAC 8838 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || ||||| | || || || || || || ||| | || |||||| | |||| || Sbjct 8837 AGCGAGCGTCTTATCGGGGAGGCGGCGAAGAACCAGGCCGCCATGAACGCGCTCAACACC 8778 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCG-GATAAGAAAGTCCAAGACGA 195540 || || || |||||||| || ||||| || |||| | || ||| | || || ||||| Sbjct 8777 GTGTTCGATGCGAAGCGGCTGATTGGGCGGC-GTTTCGGCGACAAGGAGGTGCAGGACGA 8719 Query 195541 TATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGT 195600 || ||| ||||||| | | ||| || | | | || ||||| || | || Sbjct 8718 CATGAAGCACTGGTCGT-TCAAGGTGATTGAGAAGAAC--GACAAGCCGTGCATGGAGGT 8662 Query 195601 TGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGAT 195660 ||| ||| | || |||| ||| || | | || || || || | ||| | |||| Sbjct 8661 TGAGTTTAAGGGGGAGACGAAGAGCTTCACGGCGGAGGAGATCTCTGCGATGATCCTGAT 8602 Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 ||||||||| || ||| || | | ||| || | | |||| | || ||||| || Sbjct 8601 GAAGATGAAGCAGGTTGCAGAGACGTACATCGGGCAGCCGGTGACCAAGGCGGTTGTCAC 8542 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || || || ||||||| || || || || |||||||| |||||||| | ||||| Sbjct 8541 CGTGCCGGCCTACTTCAACGACTCGCAGCGCCAGGCGACGAAGGACGCGGGAATGATTGC 8482 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 | || | ||| | || ||||| || || || || || || ||||| || || || Sbjct 8481 CGAGCTGGAGGTTCTCCGGATCATCAACGAGCCCACTGCAGCCGCGATTGCGTACGGGCT 8422 Query 195841 GGACAAGAACAAGGAC--GAAG-ATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||| | | || |||| | || || | ||||| |||||||| || || || Sbjct 8421 CGACAAGCA---GCACTTGAAGGAGCGCAACGTTCTCATCTTCGATCTCGGCGGGGGCAC 8365 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 || || || || || || || || | || || ||||| || ||||| || ||||| Sbjct 8364 CTTCGACGTGTCGCTGCTGGCAATCGACGAGGGGATCTTCGAGGTCAAGGCCACCGCTGG 8305 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGA 196017 || || ||||| || || || || ||||| || ||| | || || || || || Sbjct 8304 AGACACGCATCTCGGGGGAGAGGACTTCGACAACCGGCTTGTGGCGCACTTTTCCGAGGA 8245 Query 196018 GTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG 196077 |||| ||||||| ||||| ||| | | || || |||| || || |||| | Sbjct 8244 GTTCAAGCGAAAGAGCAAGAAGGATCTGACCGGGTCGCCGCGGGCCCTCCGGAGGCTCCG 8185 Query 196078 GACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGAT 196137 || || || ||||| ||||| ||||| ||||| || | | || | | | ||||| Sbjct 8184 CACCGCCTGCGAACGGGCCAAGCGAACGCTCTCGTCGTCCACCCAGGCCTCGATCGAGAT 8125 Query 196138 TGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGA 196197 || ||| ||||||| || || |||||||| ||| | || || || || || || || || Sbjct 8124 CGACTCGCTGTTTGAGGGGATCGACTTCTACACATCCATCACACGGGCCCGGTTCGAGGA 8065 Query 196198 GTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGC 196257 | | |||| || | || | | | | || | || |||| || || ||||| Sbjct 8064 GATCAACTACGACCTCTTCCAGTCGACACTCGCGCCGCTCGAGAAAGTTCTGCGCGACGC 8005 Query 196258 AAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCC 196317 ||| || ||| | || | || |||| ||||| || || || || || || || Sbjct 8004 CGCGATCGACAAGGCCTCCGTGTACGAGGTTGTGCTTGTTGGGGGGTCGACACGGATCCC 7945 Query 196318 GAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAA 196377 |||||| || |||| |||| |||||| || || | ||| ||||||| Sbjct 7944 GAAGATCCAGAAGATCGTTTCGGATTTCTTCGGCGGAAAGGAGCCGAGCAAGGCGATCAA 7885 Query 196378 CCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGA 196437 ||| || || || ||||| || || ||| || ||||| || || || | || | | Sbjct 7884 CCCCGACGAGGCTGTTGCATACGGCGCGAGTGTGCAGGCCGCGATACTGACGGGCG---A 7828 Query 196438 CAATAATAA--CGTC-CAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCT 196494 || || || | || || |||| || || ||||| | || | || || || | Sbjct 7827 CACGTCGAAGGCGACACAGGAGATTCTTCTGCTCGATGTCACGCCGCTCTCGCTCGGGAT 7768 Query 196495 TGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAA 196554 || || || || || || ||||| | | || ||||||| || | ||| | || Sbjct 7767 CGAGACTGCAGGCGGGGTGATGACAACGCTGATCCCGCGGAACACGACCGTCCCGTCCAA 7708 Query 196555 GAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATA 196614 |||| | || || || || || |||| || || || || || | || || || | Sbjct 7707 GAAGTCGAATGTGTTCTCGACCTACGCCGAGAACCAGCCGGGCGTGCTCATCCAGGTCTT 7648 Query 196615 TGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674 || || || || | || | ||| ||| | || || || | ||||| || | || Sbjct 7647 CGAGGGCGAGCGAGCACGGACCTCGGACAACAACCTTCTCGGGAAGTTCGAGCTGTCTGG 7588 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 |||||| | ||||| || || ||||| | ||| ||||| || ||||| || Sbjct 7587 GATTCCGCCAGCACCGGCCGGCCAGCCGCAGATCGAGGTTCTGTTCGACATCGACGCCAA 7528 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794 || ||||| || || || |||| ||||||| | | || || | | ||||| ||| Sbjct 7527 CGGGATTCTGAATGTGACGGCTGTGGACAAGACGACAGGGAAGACCAACAAGATCACGAT 7468 Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854 || || ||||||||||| || || |||||||| || || || ||||| ||||| | Sbjct 7467 AACAAACGACAAGGGGCGTCTGTCGAAGGAGGAGATCGAGCGGATGGTCAGCGATGCCGC 7408 Query 196855 AAAGTACAGGGAAGAAGACGA 196875 ||||||| | | || ||||| Sbjct 7407 GAAGTACAAGAAGGAGGACGA 7387 >seq1207 Length=23098 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || || || ||||| || ||||| || |||||||| ||| | Sbjct 18756 ATGCAGATCTTTGTGAAGACACTGACCGGAAAGACAATCACGCTTGAGGTTGACTCGGCC 18697 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | ||||| | |||| || || || || || || ||||| || || || || ||| Sbjct 18696 GAGTCGATCGAGTCCGTCAAGGCAAAAATACAGGACAAAGAAGGAATCCCCCCGGACCAG 18637 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| ||||| || || || ||||| || || || | || ||| | || |||||| Sbjct 18636 CAGCGACTGATTTTCGCAGGAAAGCAGCTGGAGGACGGGAGAACACTCTCGGACTACAAC 18577 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||| || || || || |||||| | || || || || || Sbjct 18576 ATCCAGAAGGAATCGACGCTCCATCTTGTTTTGAGACTGCGTGGCGG 18530 >seq1 Length=85208 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || || || |||||||||||||| || || | Sbjct 80492 ATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAGCC 80433 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || | ||||| |||| || || || || || || || || || || || || ||| Sbjct 80432 GAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACCAG 80373 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||| ||||| || || || ||||| || || ||| | || || | || |||||| Sbjct 80372 CAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACAAC 80313 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTG 172090 | || |||||||| || || || |||||||| | || |||||||||| Sbjct 80312 ATCCAGAAGGAGTCGACGCTGCATCTTGTTCTCCGTCTGCGGGGTGGTG 80264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848198395440