Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq655 125 9e-23 seq140 125 9e-23 seq1 125 9e-23 seq314 98.7 1e-14 seq670 93.3 5e-13 seq297 86.0 8e-11 >seq655 Length=33610 Score = 125 bits (138), Expect = 9e-23 Identities = 279/426 (65%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| ||||||||| |||||||||||| | | | | || ||||||| ||| ||||| | Sbjct 29759 ACTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTG 29818 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||| | ||||| || ||||||||||||||||| | Sbjct 29819 TCTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCGCGG 29878 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCA----CGACAGTCCGCGCGCGGCCCTNN 1628337 ||| || || ||| | || |||| |||| | | ||| || || ||| Sbjct 29879 TGACTATCTCCTGCCACAGCTTCTGCGCCGGCATTGTCTTCTTTCCCAGCCCGTCCC--- 29935 Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGC 1628397 || ||| || | || | |||| ||| || ||| Sbjct 29936 -GCTCGTACCGCTCGTACAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAGGC 29994 Query 1628398 GCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGG 1628457 || ||| |||||| || |||| |||| || | || || |||| |||||||| ||| Sbjct 29995 GCATCGTTCGGACAGAACAGCGTCCAGCTCCCGTTGTTCTCCACGCGCCGCATAAACAGG 30054 Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517 || | ||||||| || || | ||||| || || ||| |||||||||||| |||| Sbjct 30055 TCTGGCATCCACAGCGCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGTTC 30114 Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577 || ||||| ||| |||| | | || || ||||||||||| |||||| ||||| Sbjct 30115 TTCTTGAGCGAGAGGAAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCAAAC 30174 Query 1628578 GCGCCC 1628583 |||||| Sbjct 30175 GCGCCC 30180 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043 ||||||||| |||| | || |||| |||||| | || |||||||||||||||||||| Sbjct 28800 GTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGT 28859 Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTC 1627103 ||| || || ||| ||||| |||||| ||| | |||| || | || Sbjct 28860 CTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGGCGCGAATAGGTTGGCTC 28919 Query 1627104 GGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCAT 1627163 ||| ||| | ||||||||||||||| ||||||| || ||| |||| || || ||||| Sbjct 28920 GGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGCCAT 28979 Query 1627164 GTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTC 1627200 | |||| || | | || | ||||||||| ||| Sbjct 28980 CTGGATGATGTTCTTCTGCGGGATCTCCCACACCGTC 29016 >seq140 Length=1747 Score = 125 bits (138), Expect = 9e-23 Identities = 391/593 (66%), Gaps = 17/593 (3%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCC-GGCACG 1852102 ||||||| ||| ||| ||| | |||||||||| |||| || ||| |||| | Sbjct 1595 CGATCTTCGAGTTGGCGTCGGAGCTGCTCATCTTG----TCTCCCTGCATCCCAGGCATG 1540 Query 1852103 AGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGG-TGGTCGCGCGC 1852161 |||||||| | ||| |||| | |||| || ||||| |||| || | || | | | Sbjct 1539 AGCGGGTTCATCAGATGGATCCTCTTCGTGTACCCGAGCGCCGGAAGAATCTTCTCCC-C 1481 Query 1852162 AAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTG 1852221 | | || ||||| | ||| ||| ||||| ||||| ||||| ||| | |||| Sbjct 1480 GTACGTGAAGATCTTTCTCTGATCGACACCGCCGAACTGCGCGTCCACGCCAAGGTAGAC 1421 Query 1852222 CTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 ||||||||| ||||||| ||||||||| | || || | |||||| | | Sbjct 1420 CTCGTCGAGAACCTGCATCCCCGGGTAGAGAAGCGAGCCGAGCGGAGGGTTGTCGCTCTG 1361 Query 1852282 CTTGACCACCTGAGCGGCGGCCTT--TTGCGCCGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338 ||| | || | ||||| |||| || | | || | | ||| | | Sbjct 1360 CTTTGTTGTTTCAGACCCCGCCTTCTTTGCATTGTTCAGCGTTGTC---TTCGCTGTCAT 1304 Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTC 1852398 ||||||| ||||| | ||| | | |||| | ||| | || ||||||||| Sbjct 1303 GCGGTAGACGTCGATTGTGTACTCCCTAGATGTCTGGAAGTCGCTTCCCTTCACAAACTC 1244 Query 1852399 GAGTCCGCCCAG-CGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACC 1852457 || ||||| | | || || |||||| | ||||| ||||| || |||||| Sbjct 1243 GA-TCCGCTCGGGCGAAACACCGATGGACGAAAGCATCGCCTTTATCAGTCGCTCGTAGT 1185 Query 1852458 A-GCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516 | ||| | ||| | ||| | ||| | ||||| ||||| || ||||||| ||||| Sbjct 1184 ATGCGAC-CCGCTTTTCCAGCAGCTGCCACGTTGTCTTCTCGCTGTCGAGAAACGCGTGG 1126 Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576 | ||| |||||||| |||||||| | || ||||| |||||||||||| | || | | Sbjct 1125 ATGTCTGCAAAGAGTATCTTGACGTGGCACCCGGCTGCGAGAAAGTCGGCGATCTTCAGG 1066 Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATA 1852629 || || |||||||| || |||||||| | || || ||||| || ||||| || Sbjct 1065 ATAGGGACAAAGTACCCGAGGTGCGGTCTTCCTGTTGGCGCAGTTCCCCAGTA 1013 >seq1 Length=85208 Score = 125 bits (138), Expect = 9e-23 Identities = 194/271 (72%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||||||| ||||| |||| || || |||| ||||| |||||| Sbjct 27413 CCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGCCCAGGCAGCAGGCCCCGCTTC 27472 Query 869240 TTGAGCCAAAAGATGGCGCAG-AAACT-GCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 || ||||| ||||| ||||| |||| ||||||||| ||||| |||||||| || || | Sbjct 27473 TTCAGCCAGAAGAT--CGCAGCAAACGCGCCCGAGAAGAAGATCCCCTCGACTGCTGCGA 27530 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | | |||||| ||| ||||| || |||| | ||||||||| | |||| || Sbjct 27531 TTGCAACAAGCCGCACGGGGAAGGT--CGTCTCCCTG-TCCTTGATCCACCTGATCGTCC 27587 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 |||||||||| | | | || |||| | || ||||| || || || |||||| | Sbjct 27588 AGTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTGAAAAGCCTGTCCTTCT 27647 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 |||| | ||||| || || ||||| || || Sbjct 27648 CGGCGGTGTCCTCGATGTACGTGTCAATGAG 27678 Score = 122 bits (134), Expect = 1e-21 Identities = 215/310 (69%), Gaps = 10/310 (3%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||| ||||||| |||| | |||||||| || || ||||| || ||||| Sbjct 27106 GTACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGCGAAATGTTTTCCAT 27165 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||||||||| | ||||| ||| ||||| ||||| | ||| || | Sbjct 27166 AAAGTCGAACGGGTTCTCGCTGTTGTATAACTTCTCGCAGTCGAGCTCGGAGAGAAGATG 27225 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 |||||||||| |||||||||||||||||||||| | |||||| ||||| |||| || Sbjct 27226 GTCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTCATCCCGATCAGCGAGAC 27285 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 || || | ||||| | ||| | ||| ||||| || |||||| ||||| ||| | Sbjct 27286 GGGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGCCTCGCGGATGA--TGCTT 27343 Query 868939 GGG--CACGTCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCAAAG 868993 || || || ||| |||||| |||| | || | | |||||||| |||||| Sbjct 27344 TGGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCCGCAT---CAGCAGGCACGCAAAG 27400 Query 868994 TCGCAGTGCA 869003 |||| ||||| Sbjct 27401 TCGCGGTGCA 27410 Score = 122 bits (134), Expect = 1e-21 Identities = 178/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| |||||||| |||||||| || | |||| | | ||| Sbjct 27695 GAGTGGATGTTCTCGATCATTATCTGGAACCCGTAAAAACACCGCGCCTCGGGGATCTGG 27754 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| |||||| || ||||||||| || || |||||||| || || ||| Sbjct 27755 ACCTCCTGGCAGAACCGCTCGATCAGGTTCTCCAGGACTATCCCGTCGCTTGCTGCAAAA 27814 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---CCAGTGG 869809 || || || || ||| | |||||| | |||| |||| | ||| | | ||||| | Sbjct 27815 AAGGCAAGAACATGCGACAGAAAGTGTCTTTCGTTGTCGGTCAGCTTCTCCCTCCAGTCG 27874 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| | ||||| | |||||| || ||||||| || ||||||| || ||| Sbjct 27875 GCCATGTCCCGGGACAGGTCGATCTCCTCTGCCGTCCAGAAAGACGCCTCGGACTGCTTG 27934 Query 869870 TACATCTCCCA 869880 ||||| ||||| Sbjct 27935 TACATGTCCCA 27945 >seq314 Length=10542 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 732342 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTC 732401 || ||| |||||||||||| | || ||||| | ||||||| || ||||||||| Sbjct 3874 ACCCACTGCGAGGTGCACCCAACGGCGATCCTCGGCATCAGCGCGTCAATGATCCCGTTC 3933 Query 732402 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||| ||||||||||| ||||||| |||| ||||||| ||| |||| ||||||| Sbjct 3934 TCCGACCACAACCAGTCGCCGCGAAACACCTACCAGTTGGCAATGGCCAAGCAG 3987 >seq670 Length=6827 Score = 93.3 bits (102), Expect = 5e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 || |||||| | |||||||| ||||| ||| | |||| || | ||| |||| | Sbjct 3751 CCGGAGAGCAGGGGCTTTGTCGAGAACTCCTACCTGAGCGGGCTGACACCGCTCGAGTTC 3810 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || || || || ||||| || | |||||||| || |||||||| | Sbjct 3811 TTCTTCCACGCAATGGGTGGCCGGGAGGGGCTGATAGACACGGCGGTGAAGACGGCGCGG 3870 Query 509156 ACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCGCGGC 509215 ||||| |||||||||||| || || |||||| | ||| |||| || || Sbjct 3871 ACGGGGTACATCCAGCGCAGGCTGATAAAGTCGGTTGAGGACCTGGCCGTCGTCTACGAT 3930 Query 509216 GGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 ||| ||| | ||| | ||||||||| |||||||| ||| |||| |||||| Sbjct 3931 GGCTCGGTGAGAAACAGCGCGGGCGACATCATCCAGTTTCTCTACGGCGACGACGG 3986 >seq297 Length=41709 Score = 86.0 bits (94), Expect = 8e-11 Identities = 181/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 1573971 GCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATC 1574030 |||||||| || || ||||| || ||||| | || | || || || || || || Sbjct 33294 GCCGTGCTTGAGCTAAACGCATCCGACGAAAGGGGAATTGATGTTGTCCGGGGGAAGATA 33353 Query 1574031 AAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTC 1574090 || | || |||| || ||| || || | ||| | ||||| || | || || Sbjct 33354 AAAAGCTTTGCATCCAGGAAGATTACGCTCCCACAAGGAAGACACAAAGTCGTTATTCTA 33413 Query 1574091 GACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAG 1574150 |||||||| |||| | |||| | || || ||||| || |||||| | || || | Sbjct 33414 GACGAGGCTGACTTCATCACCCCCGCCGCGCAGCAAGCACTGCGGAGGATAATCGAGACA 33473 Query 1574151 CACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCC 1574210 ||| | |||| || |||||| | || || ||||| ||| | | | |||||| | Sbjct 33474 CACTCGGACACAACCCGCTTTATATTTGCCTGTAACACATCGGAAAAGATAATCGAGCCG 33533 Query 1574211 CTCCAAAGTCGCTGCGCCATTCTGCGCTTT 1574240 || || ||||| ||||||||||| |||||| Sbjct 33534 CTGCAGAGTCGGTGCGCCATTCTTCGCTTT 33563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106997474292459