Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-27 seq655 116 6e-20 seq314 114 2e-19 >seq1 Length=85208 Score = 140 bits (154), Expect = 5e-27 Identities = 229/327 (70%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||||||| ||||| ||| || || |||| ||||| |||||| Sbjct 27413 CCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGCCCAGGCAGCAGGCCCCGCTTC 27472 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| ||| || ||||||||| ||||| |||||||| || || | Sbjct 27473 TTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAGATCCCCTCGACTGCTGCGATT 27532 Query 794461 CCGACGAGCCGCTCGGCAAAAGT-GTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | || |||||| ||| || || ||| |||| | ||||||||| | |||| ||| Sbjct 27533 GCAACAAGCCGCACGGGGAAGGTCGTCT---CCCTGTCC-TTGATCCACCTGATCGTCCA 27588 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || | || | || ||||| || || || ||||||||| Sbjct 27589 GTCGGCCTTCTCCTTGACGTACGGAAGTGTTTCGATCGCATTGAAAAGCCTGTCCTTCTC 27648 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | | ||||| || ||| ||||| ||||| | ||| ||| ||||||||||| || Sbjct 27649 GGCGGTGTCCTCGATGTACGTGTCAATGAGCAAGCTGTACACCTCGGAGTGGATGTTCTC 27708 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||| || ||||| || Sbjct 27709 GATCATTATCTGGAACCCGTAAAAACA 27735 Score = 107 bits (118), Expect = 3e-17 Identities = 211/309 (68%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| ||||||| |||| | |||||||| || || ||||| || ||||| Sbjct 27107 TACTCCGACACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGCGAAATGTTTTCCATA 27166 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||||||||| | | ||| ||||||||| ||||| | || || || Sbjct 27167 AAGTCGAACGGGTTCTCGCTGTTGTATAACTTCTCGCAGTCGAGCTCGGAGAGAAGATGG 27226 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 |||||||| | || ||||||||||||||||| | |||||| ||||| |||| ||| Sbjct 27227 TCGGCGACATACTCGATGTACTGGCACATGAGCTTGTTGTTCATCCCGATCAGCGAGACG 27286 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTG 794147 || || | ||||| || ||| | ||| ||||| || |||||| ||||| ||| | Sbjct 27287 GGAAGGGCCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGCCTCGCGGATGA--TGCTTT 27344 Query 794148 GG--CACGTCGGACGACGGCTTG---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 || || || |||||||||| | || | || | | |||||||| ||||||| Sbjct 27345 GGATGACCTCCTGCGACGGCTTGTTCTTGATGTGCCGCAT---CAGCAGGCACGCAAAGT 27401 Query 794203 CGCAATGCA 794211 ||| |||| Sbjct 27402 CGCGGTGCA 27410 >seq655 Length=33610 Score = 116 bits (128), Expect = 6e-20 Identities = 286/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 2071556 TCTCCGTTGGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGC 2071615 ||||| |||||| ||| ||||| ||| |||||||||||| | | | | || | Sbjct 29741 TCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCC 29800 Query 2071616 CCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCAC 2071675 |||||| ||| ||||| | | ||||| |||||||||| || ||||| || | Sbjct 29801 CCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTC 29860 Query 2071676 CCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCC 2071735 | |||||||||||||| ||||| || || ||| | | |||| |||| | || Sbjct 29861 CGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGCTTCTGCGCCGGCATTGTCTTCT 29920 Query 2071736 TCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACT 2071795 | | | || | | || || || ||| | | || || Sbjct 29921 TTCCCAGCCCGTCCCGCTCGTACCGCTCGTACAGCGCCTCGAAGTCCTCTCCCCACGTCT 29980 Query 2071796 CGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGC 2071855 || ||| || ||||| ||| ||| || || |||| |||| ||| || |||||| Sbjct 29981 CGCTCAGCCCAGGCGCATCGTTCGGACAGAACAGCGTCCAGCTCCCGTTGTTCTCCACGC 30040 Query 2071856 GGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCT 2071915 | |||||||||||||| | ||||||| | || | || || || || ||| ||||| Sbjct 30041 GCCGCATAAACAGGTCTGGCATCCACAGCGCATAGGACAGGTCCCGTGCGCGGAACTCCT 30100 Query 2071916 CCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCA 2071975 ||||||| |||||| || || ||| |||| | | || || ||||||||||| | Sbjct 30101 CCTTGCCCGTGTTCTTCTTGAGCGAGAGGAAGTCCAGCACATCCGCATGCCACGGCTCGA 30160 Query 2071976 GGTAGCAGGCAAAGGCGCCC 2071995 ||||| ||||| |||||| Sbjct 30161 GGTAGATCGCAAACGCGCCC 30180 Score = 96.9 bits (106), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||||||||| |||| | || | || || ||| || |||||||||||||||||||| Sbjct 28800 GTCGACGGTGAACTTCACAGCCTCGGATGCGGGCATCGTTCGCAGATAGTACATGCCGGT 28859 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATG---GACTCGGCATTCGG 2069369 ||| || || ||| ||||| |||||| ||| | | || | || | || Sbjct 28860 CTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTCGTCAGGCGCGAATAGG---TTGG 28916 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 ||||| ||||| ||||||||||||||| ||||||| || ||| ||||||| || || Sbjct 28917 CTCGGCAATGTAGATGTTGAGCGACTGGCTTTGGTCGATGTACGGCCCGCGGTCTGCTGC 28976 Query 2069430 CATGTCGATG 2069439 ||| | |||| Sbjct 28977 CATCTGGATG 28986 >seq314 Length=10542 Score = 114 bits (126), Expect = 2e-19 Identities = 329/503 (65%), Gaps = 23/503 (5%) Strand=Plus/Plus Query 653641 GCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG 653700 |||| ||||| |||| |||||||| | | |||||||| || || || ||| | || Sbjct 4572 GCGCGAGCCCCAGGTTGGCGACAAGTTTGCAAGCCGCCACGGCCAGAAAGGGACCATCGG 4631 Query 653701 CAGCGTGCGCTC--GACCG-AGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGA 653757 | ||| || ||| | |||| ||||||| ||| | | ||| | || || || Sbjct 4632 GA---TGCTCTACAGACAGGAGGACATGCCGTTCACGCAG---GAGGGTGTCATCCCGGA 4685 Query 653758 CATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGC 653817 |||| |||| ||||| |||||||||||| | ||||| || ||| | | || ||| Sbjct 4686 CATCATCATAAACCCACACGCCATCCCGAGCAGAATGACGATCGGCCATCTCATCGAGTG 4745 Query 653818 CCTCCTGGGCAAGGT---GGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGG 653874 || || || ||||| |||||| | || || || ||| ||| ||||||| Sbjct 4746 TCTGCTCGGAAAGGTCTCGGCCTGTCTCG---GCGTCGAGGGAAACGCATCCCCGTTCAC 4802 Query 653875 CGGCGTCACCGTNNNNNNNNNNNNNNNNNAGTTGGCCCGCCACGGGTGCGAGCGCTACGG 653934 || ||||||||| | || | | ||||| | || ||| Sbjct 4803 CGACGTCACCGTGGACGGCATTTCAGAGGCGCTGTGCGGGTGCGGGTACCAGAAGCGCGG 4862 Query 653935 CAAGGAGGTGCTCTACCACCCGCACACGGGCGAGCCCATG---GAGGCGTTGATCTT-TT 653990 | ||| | ||||| |||| || | || || || | |||||| |||||| || Sbjct 4863 GTACGAGATCTTCTACAACCC---CATGACCGGGCACAAGTTCGAGGCGCAGATCTTCTT 4919 Query 653991 CGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGC 654050 ||| ||| | ||||||||| |||| ||| ||| |||||||||||| || || Sbjct 4920 TGGC-CCGATATACTACCAGCGCCTGAAGCACATGGTGGACGACAAGATCCATGCACGCG 4978 Query 654051 CGCGCGGCCCCGTGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTCGGGCG 654110 |||||||||| |||||||| | ||| ||||| || ||||| |||||||| || | Sbjct 4979 CGCGCGGCCCGGTGCAGATCATGACCCGCCAGCCCGTGGAGGGAAGGTCGCGCGACGGGG 5038 Query 654111 GCTTTCGCCTCGGAGAGATGGAG 654133 || | || |||| ||||||||| Sbjct 5039 GCCTGCGGTTCGGCGAGATGGAG 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916062691133153