Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1207 136 3e-27 seq1 107 1e-18 seq944 105 4e-18 >seq1207 Length=23098 Score = 136 bits (150), Expect = 3e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| |||||||| || | | | | || ||||| |||||||| ||||| Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||||||| |||||||| | || | || || ||||| | ||||||| |||||||| Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTTTGCCTTGACGGAC 18685 Query 34907 GCTATCGATTCATTGGCC---TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || |||| || || |||| || || |||||||| || || ||||| Sbjct 18686 TCGATCGACTC---GGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTC 18742 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 18743 ACAAAGATCTGCATG 18757 >seq1 Length=85208 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | | | || || || |||||||| ||||| Sbjct 80301 CTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAA 80360 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || |||| ||||||||| | || | ||||| ||||| | |||||| ||||| || Sbjct 80361 AATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTTTGCCTTGACCGA 80420 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | ||||| || | ||| || ||||| || || || ||||| || Sbjct 80421 CTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGAC 80480 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 80481 GAAGATCTGCAT 80492 >seq944 Length=26795 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| |||||||| || | | | || || || ||||| || ||||| Sbjct 9447 TCCTTTTGTATGTTGTAGTCCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAAT 9506 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||||| ||||| ||| |||| | ||||||||||| | |||||| ||||| || Sbjct 9507 ATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAG 9566 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || ||||| || || || || | || || || || || || || |||||||| Sbjct 9567 TCGATGGATTCGGATGCATCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACG 9626 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 9627 AAGATCTGCAT 9637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685944879013