Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1207 93.3 3e-14 seq1 91.5 1e-13 >seq1207 Length=23098 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || |||||||| | ||| ||| |||||| |||| |||| || || || ||||||||| Sbjct 18663 GACAAAGAAGGAATCCCCCCGGACCAGCAGCGACTGATTTTCGCAGGAAAGCAGCTGGAG 18604 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| | |||| | ||||||||||||| || ||||| || ||| | || | || ||| Sbjct 18603 GACGGGAGAACACTCTCGGACTACAACATCCAGAAGGAATCGACGCTCCATCTTGTTTTG 18544 Query 107769 AGATTGCGAGGGGG 107782 ||| |||| || || Sbjct 18543 AGACTGCGTGGCGG 18530 >seq1 Length=85208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107554 AAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTG 107613 ||||||| || || ||||| || | ||||| || || || ||| |||| || | | Sbjct 80494 AAATGCAGATCTTCGTCAAGACACTGACAGGGAAGACGATCACCCTCGAGGTCGATTCAG 80435 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| | ||| ||| || ||| || || ||||| || | ||| || | Sbjct 80434 CCGAGTCGATCGAGTCGGTCAAGGCAAAAATCCAGGACAAAGAGGGAATCCCCCCAGACC 80375 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| |||| ||||| || ||||| ||||||| | |||| || | ||||||| Sbjct 80374 AGCAGAGACTCATTTTCGCGGGAAAGCAGCTCGAGGACGGAAGAACACTGTCCGACTACA 80315 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 |||| || |||||||| ||| |||| Sbjct 80314 ACATCCAGAAGGAGTCGACGCTGCA 80290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398868404515903