Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq655 168 6e-37 seq1 116 4e-21 seq944 93.3 4e-14 seq1207 89.7 5e-13 >seq655 Length=33610 Score = 168 bits (186), Expect = 6e-37 Identities = 1012/1594 (63%), Gaps = 49/1594 (3%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || ||||||||||||||||| ||||| || ||| | ||| ||||| ||||| | Sbjct 28837 GTTCGCAGATAGTACATGCCGGTCTTCAGCCCCTTCTTCCAGCCGTAGAAGTGCATGCTC 28896 Query 148011 GACATGAGCGTGTACGTCGGGTGCGGCACAAACAGAT--TAAACGACTGGCTCTGGTCAA 148068 | || | ||| || || || | ||||| | |||| | | ||||||||| ||||| | Sbjct 28897 GTCAGGCGCGAATAGGTTGGCT-CGGCA-ATGTAGATGTTGAGCGACTGGCTTTGGTCGA 28954 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCG 148128 || ||| || ||||| || ||||| | |||| ||| | |||||||| ||| Sbjct 28955 TGTACGGCCCGCGGTCTGCTGCCATCTGGATGATGTTCTTCTGCGGGATCTCCCACACCG 29014 Query 148129 TCTTGTACAGCCGCTTGATATGATC-GGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 || ||| |||| ||| | | | |||| ||| | |||||||||| | || ||| | Sbjct 29015 TCCGGTAGAGCCTCTTCAGCTCCGCCGGGATTGCTG-CGATGCGCTGGATAGACCCGTTG 29073 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGT---ATAGGTTGAGCTCGATCAGGTCA 148244 | || | ||||| | | || |||| || | || || | ||| || Sbjct 29074 TCTGCTATCATCTGTGT---CTTTGTCTCCGCGTTCCACAGCCCACGCCGGCACAGCTCC 29130 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 |||| | || |||| ||| |||||||| || || || || |||| ||| | | Sbjct 29131 CGTATCATAGCGCCGTTGACCATCTGGAACTCGCCAGCAAGAACCCGACGCACATAGAGG 29190 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||||| || |||| || | | ||| | || | || | || || | ||| || Sbjct 29191 TTGCTGGTGTACGGCTCCACGGTCTCCGAGAACCCGAGGATGTTCGACGTGGATGCGGTC 29250 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424 |||||| ||| || || |||||||| |||| ||| | | || || || | ||| Sbjct 29251 GGCATGGGCGCAACAAGAAGCGAGTTCCGCAGCCCGTGCTCCTTGATCTTCTCCCGCAG- 29309 Query 148425 GCCG-CCCAGTC-----CCAGAG-CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 || | |||||| || | || || || |||||| |||||||||| ||||||| Sbjct 29310 GCTGTCCCAGTTGTTCTCCTCTGTCGCCGGGGGAGTCACGCCCCACATGTCGCACTGCAG 29369 Query 148478 AATGCCGCGGCTAGCGGGGCTGCCCTCGTA---CGAGCTGTACGGTCCGTGCGCCGCCGC 148534 | ||| ||||| | || ||| | || || | | ||| | || || | Sbjct 29370 GAAGCCCCGGCTGACTGGAGACCCCGCATAGCTCG-GATAGACGCCCTTCTCGAGGCTG- 29427 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 || ||||| |||||||| || ||| ||| | ||||||| || ||| ||||| Sbjct 29428 -AGCTCGCACGAGGCCTCGAGGGCTGCGTGGTACACCGTCTCGAATATCCGCCGGTTGAT 29486 Query 148595 CAGCGCCGCCGAC-TCGCTTTCGTACGGCATACGCAGCCGCACA-AACGCGTCGGCAAGG 148652 |||| ||| | ||| ||| |||| | ||| |||| || | || ||||| Sbjct 29487 G-GCGCGGCCCTCCTCGGAGTCGAACGGGACCTTTAGCT-CACAGAAAACATCCGCAAGT 29544 Query 148653 CCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC 148712 ||||| || || | ||||| || |||||| | ||| ||| || |||| ||| Sbjct 29545 CCCTGCACACCGAGGCCAAGCGGGCGGTGTCGCAGGTTCGAGGTCTTTGCCTTCTCAAGC 29604 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTG 148772 || || ||||| ||||||||||||||| || || || | | |||||| | || Sbjct 29605 GGGTACCGGTTGTTGTCGATGATCTTGTCCAGGTTCCGTGTTGCGATCTTTGTCACCTTG 29664 Query 148773 CGCAGCAATTCAAAATCGTACTTGTCATCTACGATGCAT--CGGTTCACGGCGATAGAGG 148830 | || | | | ||| |||| | || |||| | ||| || | | ||| Sbjct 29665 TGGAGAAGCGCGTAGTCGAGCTTGCCGTCCTCGATAAACGACGG--CAGCCCAAGAGACC 29722 Query 148831 CTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGAT 148890 | |||||||| || | |||| ||||| | ||||||| |||||||| | |||||| | Sbjct 29723 CGAGATTGCAGACCGAGATCTCCTCCGGCGACATGTACTCGACGATCTCCGTGCACAGGT 29782 Query 148891 TGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGT 148950 |||| | ||||| |||| || || || || |||| | ||||||||||||||||| Sbjct 29783 TGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGTTTGTCTTTCGGTTGCACGCGTCCTTGT 29842 Query 148951 ACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCT 149010 ||| |||||||| || || || | ||||| ||||| | | ||| | || Sbjct 29843 ACATGATGTACGGGTTTCCGGTCTCGATCTGCGCGGTGACTATCTCCTGCCACAGCTTCT 29902 Query 149011 GCGCGCGCACTTGCTGC--TCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTC 149068 |||| ||| | || | || ||| || ||| ||||||| |||||| ||| Sbjct 29903 GCGCCGGCATTGTCTTCTTTCCCAGC--CCGTCCCGCTCGTACCGCTCGTACAGCGCCTC 29960 Query 149069 GAACGCCTCGCCGTAGCAATCGTCGAGACC-GGGGCACTTGTGCGGGCACATGAGCGACC 149127 ||| |||| || | ||| || || || ||| | || ||| || | |||| || Sbjct 29961 GAAGTCCTCTCCCCACGTCTCGCTCAGCCCAGGCGCA-TCGTTCGGACAGAACAGCGTCC 30019 Query 149128 ACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGA 149187 | |||| | ||||||| ||||||||| || |||| ||| ||||| || | Sbjct 30020 AGCTCCCGTTGTTCTCCACGCGCCGCATAAACAGGTCTGGCATCCACAGCGCATAGGACA 30079 Query 149188 GGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 |||| || || | | || || |||| |||| || ||| | | | | Sbjct 30080 GGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGTTCTTCTTGAGCGAGAGGAAGTCCAGCA 30139 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTGCCGCCC 149303 ||||| ||||||||||| | ||| | ||| | |||||| ||| |||| || ||| Sbjct 30140 CATCCGCATGCCACGGCTCGAGGTAGATCGCAAACGCGCCCGGTCTTTTGCTT-CCTCCC 30198 Query 149304 TGGTCGACGTGGCGCACCATGTTG--TTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 ||||| | | || || |||| | ||| || || | ||| || |||| || | | Sbjct 30199 TGGTCCGCATACCGTGCC--GTTGCATCAAAGACACGGAGCATCGGAACAATACCGTTTG 30256 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGC 149421 | |||||| || | || || |||| || || | ||||| | ||| | | Sbjct 30257 AAACGCCGTTTGTTCCCCGGATAAGAGACCCGCTTGCCCGGATGTTGTGGATGTTCAGCC 30316 Query 149422 CGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCT 149481 ||||||| |||| || || || |||||| | || ||| |||||| |||| Sbjct 30317 CGATGCCTGCGCCTGTCTGCGATATCAGCGCGCACTGTGTCAGTGTCTTGTAGATCCCCT 30376 Query 149482 CGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515 || |||| ||| ||||||| |||||| Sbjct 30377 TCATCGAGTCGTCGGCCATCGTCAGCACAAAGCA 30410 >seq1 Length=85208 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| || || ||||||||||||||| ||| Sbjct 80296 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCC 80355 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| | ||||||||| || ||||| || || ||||| ||| ||| |||| Sbjct 80356 GCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCTGGATTTTTGCCTTG 80415 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | || |||| | || || |||| ||||| || || || ||||| || Sbjct 80416 ACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTC 80475 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 80476 TTGACGAAGATCTGCAT 80492 >seq944 Length=26795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||||||||| || ||| | || || | |||||| || || ||||| || ||||| Sbjct 9482 GTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCGGGATTCCCTCCTT 9541 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||| ||| ||||| || | | |||| | ||||| |||| |||| Sbjct 9542 GTCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCACCTCGAGTGTGAT 9601 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| ||||| || |||||||| |||||||| Sbjct 9602 TGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCAT 9637 >seq1207 Length=23098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| |||| || ||||||||||| || ||||| ||||| || Sbjct 18601 GTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTT 18660 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| || ||| ||||| ||| | || |||| | || || || | |||| Sbjct 18661 GTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGAT 18720 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || |||||||| || || || || ||||||||| Sbjct 18721 TGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCATG 18757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410364153480