Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016-
11-10] 1,727 sequences; 5,620,147 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq944 118 7e-22
seq1 84.2 1e-11
seq1207 82.4 5e-11
>seq944
Length=26795
Score = 118 bits (130), Expect = 7e-22
Identities = 171/236 (72%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTC---TCTTTTTGTATGTTGTAAT 33577
|||| ||||| | ||| | ||| || || ||||| || || |||||||||||||| |
Sbjct 9409 CACCGCCTCTAAGACGCAGCAC--AAGGTGGAGTG-TCGATTCCTTTTGTATGTTGTAGT 9465
Query 33578 CGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTT 33637
| |||||||| | | |||| || | || || || || || |||| | ||||||||||
Sbjct 9466 CCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTG 9525
Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT 33696
|||| | || || ||||| ||||| ||| | ||| |||| | || ||| ||
Sbjct 9526 GCGGGATTCCCTCCTTGTCCTGGATTTT-TGTCTTGACAGAGTCGATGGATTCGGATGCA 9584
Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
||||| || | ||||| ||||| ||||| | ||| ||||| ||||||||||| ||
Sbjct 9585 TCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATTGT 9640
>seq1
Length=85208
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || ||| | || | ||| || || ||| || || |||||||| ||||
Sbjct 80264 CACCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 80323
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| ||||| | | |||| || | || ||||| || ||||| | | |||||| ||| | |
Sbjct 80324 ACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGG 80383
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | || |||||||| ||||| || | || | || | | ||| ||| ||
Sbjct 80384 GGATTCCCTCTTTGTCCTGGATTTT-TGCCTTGACCGACTCGATCGACTCGGCTGAATCG 80442
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | |||||||| || ||||| | || || || |||||||||||
Sbjct 80443 ACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCAT 80492
>seq1207
Length=23098
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||| || |||||||| | |||| |||| || ||||| || |||
Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|||| |||||||| || | || | ||||||||||| ||||| || | || |
Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTT-TGCCTTGACGGA 18684
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
|| | | ||| || || || |||| |||||| || || || || | || || ||
Sbjct 18685 CTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCAC 18744
Query 33738 AAAGATCTGCAT 33749
||||||||||||
Sbjct 18745 AAAGATCTGCAT 18756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328697081499840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |