Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq944 118 7e-22 seq1 84.2 1e-11 seq1207 82.4 5e-11 >seq944 Length=26795 Score = 118 bits (130), Expect = 7e-22 Identities = 171/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTC---TCTTTTTGTATGTTGTAAT 33577 |||| ||||| | ||| | ||| || || ||||| || || |||||||||||||| | Sbjct 9409 CACCGCCTCTAAGACGCAGCAC--AAGGTGGAGTG-TCGATTCCTTTTGTATGTTGTAGT 9465 Query 33578 CGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTT 33637 | |||||||| | | |||| || | || || || || || |||| | |||||||||| Sbjct 9466 CCGAGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTG 9525 Query 33638 GCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT 33696 |||| | || || ||||| ||||| ||| | ||| |||| | || ||| || Sbjct 9526 GCGGGATTCCCTCCTTGTCCTGGATTTT-TGTCTTGACAGAGTCGATGGATTCGGATGCA 9584 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 ||||| || | ||||| ||||| ||||| | ||| ||||| ||||||||||| || Sbjct 9585 TCCACCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATTGT 9640 >seq1 Length=85208 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | || | ||| || || ||| || || |||||||| |||| Sbjct 80264 CACCACCCCGCAGACGGAGAACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 80323 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| | | |||| || | || ||||| || ||||| | | |||||| ||| | | Sbjct 80324 ACAGTGTTCTTCCGTCCTCGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGG 80383 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| ||||| || | || | || | | ||| ||| || Sbjct 80384 GGATTCCCTCTTTGTCCTGGATTTT-TGCCTTGACCGACTCGATCGACTCGGCTGAATCG 80442 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || ||||| | || || || ||||||||||| Sbjct 80443 ACCTCGAGGGTGATCGTCTTCCCTGTCAGTGTCTTGACGAAGATCTGCAT 80492 >seq1207 Length=23098 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || |||||||| | |||| |||| || ||||| || ||| Sbjct 18566 TCCTTCTGGATGTTGTAGTCCGAGAGTGTTCTCCCGTCCTCCAGCTGCTTTCCTGCGAAA 18625 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||| || | || | ||||||||||| ||||| || | || | Sbjct 18626 ATCAGTCGCTGCTGGTCCGGGGGGATTCCTTCTTTGTCCTGTATTTT-TGCCTTGACGGA 18684 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | ||| || || || |||| |||||| || || || || | || || || Sbjct 18685 CTCGATCGACTCGGCCGAGTCAACCTCAAGCGTGATTGTCTTTCCGGTCAGTGTCTTCAC 18744 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 18745 AAAGATCTGCAT 18756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697081499840