Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 221 2e-51 seq670 93.3 6e-13 seq655 91.5 2e-12 seq314 89.7 7e-12 >seq1 Length=85208 Score = 221 bits (244), Expect = 2e-51 Identities = 395/566 (70%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||| ||||||| || ||| | | ||||| || |||| || | ||||| Sbjct 28008 GAGCAGCTGCTGGCAGAGAACAAGCAGCGCTTCGTTTTGTTTCCGCTGAAGTACCACGAC 27949 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || || ||||||| || || ||||| || |||||| ||||||| Sbjct 27948 ATCTGGGACATGTAC-AAGCAGTCCGAGGCGTCTTTCTGGACGGCAGAGGAGATCGACCT 27890 Query 1455836 CGGCGCCGACACGGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | |||| || | ||||| | | ||||| |||| |||| | || || | Sbjct 27889 GTCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCGACAACGAAAGACACTTTCTGTC 27830 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||| || || ||||||||| || || ||||| || || || ||||||||| || | Sbjct 27829 GCATGTTCTTGCCTTTTTT-GCAGCAAGCGACGGGATAGTCCTGGAGAACCTGATCGAGC 27771 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || | |||||||| | || ||||| || | ||||||||||||||||| | Sbjct 27770 GGTTCTGCCAGGAGGTCCAGATCCCCGAGGCGCGGTGTTTTTACGGGTTCCAGATAATGA 27711 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| || ||| | || || ||||| ||| || ||||| | | Sbjct 27710 TCGAGAACATCCACTCCGAGGTGTACAGCTTGCTCATTGACACGTACATCGAGGACACCG 27651 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 |||||||||| || || || ||||| || | |||| || | | | ||||||| Sbjct 27650 CCGAGAAGGACAGGCTTTTCAATGCGATCGAAACACTTCCGTACGTCAAGGAGAAGGCCG 27591 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGG 1456192 ||||| |||| | ||||||||| | |||| |||| ||| ||| |||||| || | Sbjct 27590 ACTGGACGATCAGGTGGATCAAGGA-CAGGGAGACGAC-CTTCCCCGTGCGGCTTGTTGC 27533 Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGC-AGTTT-CTGCGCCATCTTTTGGCTC 1456249 | || || |||||||| ||||| ||||||||| |||| ||||| ||||| ||||| Sbjct 27532 AATCGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTTTGCTGCG--ATCTTCTGGCTG 27475 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| ||||| |||| || || Sbjct 27474 AAGAAGCGGGGCCTGCTGCCTGGGCT 27449 Score = 116 bits (128), Expect = 5e-20 Identities = 227/327 (69%), Gaps = 14/327 (4%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCG 1456508 ||||| | |||||||| || ||||| | | || | |||| |||||||||| | Sbjct 27410 TGCACCGCGACTTTGCGTGCCTGCTG---ATGCGGCACATCAAGAACAAGCCGTCGCAGG 27354 Query 1456509 ACGTG--CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGA 1456566 | || || ||||| ||||| |||||| || ||||| ||| | ||| || |||| Sbjct 27353 AGGTCATCCAAAGCA--TCATCCGCGAGGCTGTTGAGATAGAGCACCGCTTTCTCGGCGA 27296 Query 1456567 GTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | | || || || |||| ||||| |||||| || |||||||||||||||||| | | Sbjct 27295 GGCCCTTCCCGTCTCGCTGATCGGGATGAACAACAA-GCTCATGTGCCAGTACATCG-AG 27238 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 | ||||||||||| || ||| | | ||||| |||| |||||| ||| | | || Sbjct 27237 TATGTCGCCGACCATCTTCTCTCCGAGCTCGACTGC-GAGAAGTTATACAACAGCGAGAA 27179 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||||||| | ||||| || ||||| || || |||||||| | |||| || Sbjct 27178 CCCGTTCGACTTTATGGAAAACATTTCGCTGATCGGGAAAACCAACTTCTACGAGAAGCG 27119 Query 1456747 CGTGGC-GAGTACGCCAAGGCCGGCGT 1456772 |||| | |||||| ||| | ||||| Sbjct 27118 CGTGTCGGAGTACCGGAAGTCTGGCGT 27092 >seq670 Length=6827 Score = 93.3 bits (102), Expect = 6e-13 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1816048 GCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCC 1816107 ||||||| |||| || |||||||| |||||||| | ||| | ||| ||| | Sbjct 3987 GCCGTCGTCGCCGTAGAGAAACTGGATGATGTCGCCCGCGCTGTTTCTCACCGAGCCATC 3928 Query 1816108 GCGCTTGATCTGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTCC 1816167 | || |||| ||| | |||||| || || |||||||||||| || ||||| Sbjct 3927 GTAGACGACGGCCAGGTCCTCAACCGACTTTATCAGCCTGCGCTGGATGTA-CCCCGTCC 3869 Query 1816168 G-GCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 | || ||||| || |||||||| | ||| ||||| ||||| || || ||| || || | Sbjct 3868 GCGCCGTCTTCACCGCCGTGTCTATCAGCCCCTCCCGGCCACCCATTGCGTGGAAGAAGA 3809 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| ||| | || |||| | ||| ||||| |||||||| | |||||| || Sbjct 3808 ACTCGAGCGGTGTCAGCCCGCTCAGGTAGGAGTTCTCGACAAAGCCCCTGCTCTCCGG 3751 >seq655 Length=33610 Score = 91.5 bits (100), Expect = 2e-12 Identities = 174/255 (68%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT 263226 ||| | || || ||| |||| | ||| ||||||||| | || | | | ||| Sbjct 29042 CCGGCGGAGCTGAAGAGGCTCTACCGGACGGTGTGGGAGATCCCGCAGAAGAACATCATC 28983 Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 | ||||| || ||||||| ||| || ||||||| ||||||||||||||| | ||| | Sbjct 28982 CAGATGGCAGCAGACCGCGGGCCGTACATCGACCAAAGCCAGTCGCTCAACATCTACATT 28923 Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 ||||| || || | || | ||| |||||| ||| | ||| || || Sbjct 28922 GCCGAGCCAACCTATTCGCGCCTGACGAGCATGCACTTCTACGGCTGGAAGAAGGGGCTG 28863 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||||||||||||||||| || |||||| || | || | | ||||||||| Sbjct 28862 AAGACCGGCATGTACTATCTGCGAACGATGCCCGCATCCGAGGCTGTGAAGTTCACCGTC 28803 Query 263407 GATCAGGCGATGGCT 263421 || || ||| |||| Sbjct 28802 GA-CACGCGGAGGCT 28789 >seq314 Length=10542 Score = 89.7 bits (98), Expect = 7e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||| |||| ||| ||||||| |||| ||||||| ||||||||||| ||| ||||| Sbjct 3987 CTGCTTGGCCATTGCCAACTGGTAGGTGTTTCGCGGCGACTGGTTGTGGTCGGAGAACGG 3928 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 ||| || ||||||| | ||| || || | ||||| |||||| ||| || Sbjct 3927 GATCATTGACGCGCTGATGCCGAGGATCGCCGTTGGGTGCACCTCGCAGTGGGT 3874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177644627675774