Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq944 127 2e-24 seq1207 107 2e-18 seq1 95.1 1e-14 >seq944 Length=26795 Score = 127 bits (140), Expect = 2e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || || ||||||||||| |||||||||| || Sbjct 9411 CCGCCTCTAAGACGCAGCACAAGGTGGAGTGTCGATTCCTTTTGTATGTTGTAGT--CCG 9468 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| ||| |||||||| || || || || |||| | ||||||||| |||| Sbjct 9469 AGAGTGTTCTTCCGTCTTCGAGCTGCTTCCCAGCGAATATCAGTCTCTGCTGATCTGGCG 9528 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || |||||| ||||| | ||| | | ||||| | |||| Sbjct 9529 GGATTCCCTCCTTGTCCTGGATTTTTGTCTTGACAGAGTCGATGGATTCGGATGCATCCA 9588 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||||| || || ||||| || || | || || ||||| || |||||| || Sbjct 9589 CCTCGAGTGTGATTGTTTTGCCTGTCAGCGTCTTTACGAAGATCTGCATTGTG 9641 >seq1207 Length=23098 Score = 107 bits (118), Expect = 2e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGT-- 134553 |||| ||| || || || ||||| |||||||| || |||||||||| || | |||| Sbjct 18539 AGTCTCAAAACAAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGT--CCGAGAGTGTTC 18596 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 ||| || ||||| || ||||| ||||||| |||||||| || || || || |||| Sbjct 18597 TCCCGTCCTCCAGCTGCTTTCCTGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCTT 18656 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 |||| || || |||||| ||||| | || | | |||| ||| || || || || | Sbjct 18657 CTTTGTCCTGTATTTTTGCCTTGACGGACTCGATCGACTCGGCCGAGTCAACCTCAAGCG 18716 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||| | || || || || || ||||| Sbjct 18717 TGATTGTCTTTCCGGTCAGTGTCTTCACAAAGATCTGCAT 18756 >seq1 Length=85208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGT--GAGAGTCGT 134562 || || || ||||| || ||||| || |||||||||||| || |||| ||| | Sbjct 80284 ACAAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG--GACAGTGTTCTTCCGTCCT 80341 Query 134563 CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTT 134622 ||||||| || || || ||||| | | |||||| || || || || || ||||| || | Sbjct 80342 CGAGCTGCTTTCCCGCGAAAATGAGTCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCCT 80401 Query 134623 GAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | |||||| ||||||| || | | |||| || || || ||||| || || || | Sbjct 80402 GGATTTTTGCCTTGACCGACTCGATCGACTCGGCTGAATCGACCTCGAGGGTGATCGTCT 80461 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 | || || | || || ||||| || ||||||| Sbjct 80462 TCCCTGTCAGTGTCTTGACGAAGATCTGCATTT 80494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387489712040