Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 >seq1 Length=85208 Score = 123 bits (136), Expect = 2e-23 Identities = 384/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| | | || || ||||| ||| | |||||||| | | ||||||| || | Sbjct 27971 TGTTTCCGCTGAAGTACCACGACATCTGGGACATGTACAAGCAGTCCGAGGCGTCTTTCT 27912 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC--ATTAAAACC 43824 |||| ||||| || | || || | ||| | || | |||| | | | | Sbjct 27911 GGACGGCAGAGGAGATCGACCTGTCCCGGGACATGGCCGACTGGAGGGAGAAGCTGACCG 27852 Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| |||| ||| ||| | || ||| | || |||||||| || ||||||||||||| Sbjct 27851 ACAACGAAAGACACTTTCTGTCGCATGTTCTTGCCTTTTTTGCAGCAAGCGACGGGATAG 27792 Query 43884 TCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 || || || || | ||||| ||| || || || || | || || || || ||| Sbjct 27791 TCCTGGAGAACCTGATCGAGCGGTTCTGC-CAGGAGGTCCAGATCCCCGAGGCGCGGTGT 27733 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 ||||| ||||| || || || || || || || || || ||||||| | || || Sbjct 27732 TTTTACGGGTTCCAGATAATGATCGAGAACATCCACTCCGAGGTGTACAGCTTGCTCATT 27673 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || ||||||||| | || ||||||| | | | || |||||||| |||||| | Sbjct 27672 GACACGTACATCGAGGACACCGCCGAGAAGGACAGGCTTTTCAATGCGATCGAAACACTT 27613 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA---TTC 44118 || | || | || | || || |||||| | | | ||||| || | || | Sbjct 27612 CCGTACG-TCAAGGAGAAGGCCGACTGGACGATCAGGTGGATCAAGGACAGGGAGACGAC 27554 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 || | || ||||| || | |||| || || || || ||||| || || |||| Sbjct 27553 CTTCCCCGTGCGGCTTGTTGCAATCGCAGCAGTCGAGGGGATCTTCTTCTCGGGCGCGTT 27494 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| || || || ||| | ||||| || || || |||||||| |||| || || || || Sbjct 27493 TGCTGCGATCTTCTGGCTGAAGAAGCGGGGCCTGCTGCCTGGGCTGACCTTCTCGAACGA 27434 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | | || || || || || || | || |||| ||||| ||| || Sbjct 27433 GCTGATCAGCCGGGACGAGGGAGTGCACCGCGACTTTGCGTGCCTG 27388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447634420635