Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq655 120 4e-22 >seq655 Length=33610 Score = 120 bits (132), Expect = 4e-22 Identities = 521/814 (64%), Gaps = 15/814 (2%) Strand=Plus/Plus Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | || || || || | |||| | ||| || ||||||| | || |||| Sbjct 29756 TGTACTCGACGATCTCCGTGCACAGGTTGCTCCCCTTGATTGTCCCCAGGTGCTGGTGGT 29815 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 | |||| ||||||||| |||||||| | ||||| || | || ||||| |||| | Sbjct 29816 TTGTCTTTCGGTTGCACGCGTCCTTGTACATGATGTACGGGTTTCCGGTCTCGATCTGCG 29875 Query 111399 ATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGT--TGGCCCGTCCCT 111455 ||| || ||| ||| | | || ||| | | || || | | | || | || | Sbjct 29876 CGGTGACTATCTCCTGCCACAGCTTCTGCGCCGG---CATTGTCTTCTTTCCCAGCCCGT 29932 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || ||||||| ||| || || || || ||||| ||| || ||| || || | Sbjct 29933 CCCGCTCGTACCGCTCGTACAGCGCCTCGAAGTCCTCTCCCCACGTCTCGCTCAGCCCAG 29992 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || | || |||||||| || | ||| || | ||| || ||| ||| || | Sbjct 29993 GCGCATCGTTCGGACAGAACAGCGTCCAGCTCCCGTTGTTCTCCACGCGCCGCATAAACA 30052 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGG 111634 ||||||| |||||||| | | | || || | | | | || | || | | || || Sbjct 30053 GGTCTGGCATCCACAGCGCATAGGACAGGTCCCGTGCGCGGAACTCCTCCTTGCCCGTGT 30112 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 | | | | | ||||| |||| | |||||| ||||| ||||| || |||| || Sbjct 30113 TCTTCTTG-AGCGAGAGGAAGTCCAGCACATCCGCATGCCACGGCTCGAGGTAGATCGCA 30171 Query 111695 ATAGATCCC----TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 | | ||| ||| | | || | || | |||| || || || || | ||| || Sbjct 30172 AACGCGCCCGGTCTTTTG-CTTCCTCCCTGGTCCGCATACCGTGCCGTTGCATCAAAGAC 30230 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 || ||||| |||| |||||| | ||| || ||||| ||||| ||| |||| | Sbjct 30231 ACGGAGCATCGGAACAATACCGTTTGAAACGCCGTTTGTTCCCCGGATAAGAGACCCGCT 30290 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 || | | | ||||||| || ||| || || | | || || || |||| || Sbjct 30291 TGCCCGGATGTTGTGGATGTTCAGCCCGATGCCTGCGCCTGTCTGCGATATCAGCGCGCA 30350 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 || || || || ||||| || || || ||||| || | | | | ||||| Sbjct 30351 CTGTGTCAGTGTCTTGTAGATCCCCTTCATCGAGTCGTCGGCCATCGTCAGCACAAAGCA 30410 Query 111931 ACTGGACATCTGCGGTCTTGG-TGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 ||||| | ||| | | ||| | | || ||||| | || || ||||||||||| |||| Sbjct 30411 GCTGGAAAGCTG-GTTGTTGTCTTTGCCGGCATTCATCAGCGTCGGTGTTGCGTGGATGA 30469 Query 111990 ACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 | | | | ||||| | ||||||||||||| | |||||||| || ||||||| Sbjct 30470 AGTTCCGCCGAGACATGTGCTCGTATGTCTCCAGCGCCTTCTCAATGTCCTCGCCGTGGA 30529 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | | ||| || ||||| | ||||| ||| || Sbjct 30530 TCTCAACTGCAACACGCATCAGCATGTGCTGCGG 30563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018442359200