Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphiamblys_20sp._20WSBS2006_20[genbank_20GCA_5F001875675.1_202016- 11-10] 1,727 sequences; 5,620,147 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 125 9e-24 >seq1 Length=85208 Score = 125 bits (138), Expect = 9e-24 Identities = 281/413 (68%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 || ||||||||| ||||||| || |||||| || || || |||||||| || || Sbjct 27116 ACGCGCTTCTCGTAGAAGTTGGTTTTCCCGATCAGCGAAATGTTTTCCATAAAGTCGAAC 27175 Query 129797 GGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGAC 129855 ||||||| ||| | || | || ||| || | || ||| ||| | || | ||| Sbjct 27176 GGGTTCTCGCTGTTGTATAACTTCTCGCAGTCGAG-CTCGGAGAGAAGATGGTCGGCGAC 27234 Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGA-GCG 129914 ||||| ||||||| |||| || | |||||| ||||| || | | |||| | | Sbjct 27235 ATACTCGATGTACTGGCACATGAGCTTGTTGTTCATCCCGATCAGCG-AGACGGGAAGGG 27293 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 | || || || | | ||| || || ||||| || || | |||| || ||| || Sbjct 27294 CCTCGCCGAGAAAGCGGTGCTCTATCTCAACAGCCTCGCGGATGATGCTTTGGATGACCT 27353 Query 129975 CCGTGCCAGGTCTATTGCGCAAAGT----CTTGAAGAGTTCCACGGCAAACTCCTGGTGG 130030 || ||| | | || | | | || | | | || |||| |||| || |||| Sbjct 27354 CC-TGCGACGGCTTGTTCTTGATGTGCCGCATCAGCAGG--CACG-CAAAGTCGCGGTGC 27409 Query 130031 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 130090 | |||||||| ||| ||| || || ||||||||| ||| || |||| || |||||| Sbjct 27410 ACTCCCTCGTCCCGGCTGATCAGCTCGTTCGAGAAGGTCAGCCCAGGCAGCAGGCCCCGC 27469 Query 130091 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||||||| |||||| |||||| ||| | ||| ||||||||||||||||| || Sbjct 27470 TTCTTCAGCCAGAAGATCGCAGCAAACGCGCCCGAGAAGAAGATCCCCTCGAC 27522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421849530120